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BaseInfo

ncRNA ID	novel_zma_miR13653
Species	Zea mays
Class	miRNA
Genome position	Chr4:232086452-232086579 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - GGCAUGUUUGGUUUGUUGCCUCAA - 24
Stem-loop(if miRNA)	--                U  CUCAAU                ACUUUUUUGCCUA             A   GGCAUGUUUGGUUUGU GC      UGCCACACUUUGCCUA             AGGUUAGUUAUUC A   |||||||||||||||| ||      ||||||||||||||||             ||||||||||||| U   CCGUACAAACCAAACA CG      ACGGUGUGAAACGGAU             UCCAAUCAGUAAG U UC                C  AUUUAC                -------------             U
Stem-loop sequence	GGCAUGUUUGGUUUGUUGCCUCAAUUGCCACACUUUGCCUAACUUUUUUGCCUAAGGUUAGUUAUUCAAUUUGAAUGACUAACCUUAGGCAAAGUGUGGCACAUUUAGCCACAAACCAAACAUGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069790.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||||||||||=||||||||||||| targets:1353   UUGAGGCAACGAACCAAACAUGCC   1376 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0287K05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ072721.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||||||=|||=||||||||||||| targets:20   UUGAGGUAACGAACCAAACAUGCC   43 Target Full Sequence	2.0	TSA: Zea mays contig08358, mRNA sequence	NA	coding protein	psRNATarget
NM_001176105.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||||||=|||=||||||||||||| targets:17   UUGAGGUAACGAACCAAACAUGCC   40 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383457 (LOC100383457), mRNA	NA	coding protein	psRNATarget
BT067270.2	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||||||=|||=||||||||||||| targets:17   UUGAGGUAACGAACCAAACAUGCC   40 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0366K14 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=||||||||||||||| targets:106   UU-AGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	1.0	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=||||||||||||||| targets:106   UU-AGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	1.0	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=||||||||||||||| targets:106   UU-AGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	1.0	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008683326.2	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||||||=||*=||||||||||||| targets:2229   UUGAGGUAAAGAACCAAACAUGCC   2252 Target Full Sequence	3.0	PREDICTED: Zea mays DUF1336 domain containing protein expressed (LOC100274268), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=|||||||||||*||| targets:106   UU-AGGCAGCAAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
HI403441.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=*|||||||||||||| targets:107   UU-AGGCAGGAAACCAAACAUGCC   129 Target Full Sequence	2.0	Sequence 1566 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235571.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=*|||||||||||||| targets:107   UU-AGGCAGGAAACCAAACAUGCC   129 Target Full Sequence	2.0	Sequence 1566 from Patent EP2985353	NA	coding protein	psRNATarget
JB163902.1	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=*|||||||||||||| targets:107   UU-AGGCAGGAAACCAAACAUGCC   129 Target Full Sequence	2.0	Sequence 1566 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||||=*=||||||||||||| targets:15   UU-AGGCAGGGAACCAAACAUGCC   37 Target Full Sequence	3.0	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
BT041551.2	ncRNA:24   AACUCCGUUGUUUGGUUUGUACGG   1   ||-|||=|=*|||||||||||||| targets:1029   UU-AGGUAGGAAACCAAACAUGCC   1051 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0002H08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539109.1	ncRNA:20   CCGUUGUUUGGUUUGUACGG   1   ||||=*|||||||||||||| targets:1   GGCAGGAAACCAAACAUGCC   20 Target Full Sequence	2.0	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme family (LOC100384009), transcript variant X1, mRNA	NA	coding protein	psRNATarget