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BaseInfo

ncRNA ID novel_zma_miR13651
Species Zea mays
Class miRNA
Genome position Chr4:227737768-227737896 [+]
Reference genome RefGen_v4
Source SRR1997866
Length 24
Mature sequence(if miRNA) 106 - ACUUUAGGGAAACUGUUGGAGACA - 129
Stem-loop(if miRNA) --          -A     U    C  - -A    G      GGG    --A     -   -AU     A
  UCUCCAACAG  UCCCU AAAG GC C  GAUU UUUUUA   AGCC   AAAAC CCC   UUUGU G
  ||||||||||  ||||| |||| || |  |||| ||||||   ||||   ||||| |||   |||||
  AGAGGUUGUC  AGGGA UUUC CG G  UUGA AAAAGU   UCGG   UUUUG GGG   AAACA C
AC          AA     -    A  A GG    -      --A    GAA     A   AGU     U
Stem-loop sequence UCUCCAACAGAUCCCUUAAAGCGCCAGAUUGUUUUUAGGGAGCCAAAAACCCCAUUUUGUAGCUACAAAUGAGGGAGUUUUAAGGGCUAUGAAAAAGUUGGGAGCACUUUAGGGAAACUGUUGGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050474.1
ncRNA:24   ACAGAGGUUGUCAAAGGGAUUUCA   1
  ||||||||||||||*||||||||*
targets:232   UGUCUCCAACAGUUCCCCUAAAGC   255

2.5 TSA: Zea mays contig51594, mRNA sequence NA coding protein psRNATarget