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BaseInfo

ncRNA ID	novel_zma_miR13646
Species	Zea mays
Class	miRNA
Genome position	Chr2:70451608-70451700 [+]
Reference genome	RefGen_v4
Source	SRR5451006
Length	24
Mature sequence(if miRNA)	70 - CAACACAAUUUGGUUCAGGGUAUA - 93
Stem-loop(if miRNA)	--          A           C       C      UUCAAUU   UACCCUGAAU AAAUUGUGUUG GGCCUCA UUGCGG       G   |||||||||| ||||||||||| ||||||| ||||||       U   AUGGGACUUG UUUAACACAAC CUGGAGU AACGUC       G AU          G           A       U      CCAUAUU
Stem-loop sequence	UACCCUGAAUAAAAUUGUGUUGCGGCCUCACUUGCGGUUCAAUUGUGUUAUACCCUGCAAUUGAGGUCACAACACAAUUUGGUUCAGGGUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008674088.2	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2688   GCAGUUUUGAUCCAAAUUGUGUUG   2711 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217230), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008674087.2	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2655   GCAGUUUUGAUCCAAAUUGUGUUG   2678 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217230), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674085.2	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2650   GCAGUUUUGAUCCAAAUUGUGUUG   2673 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217230), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674084.2	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2597   GCAGUUUUGAUCCAAAUUGUGUUG   2620 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217230), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674086.2	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2594   GCAGUUUUGAUCCAAAUUGUGUUG   2617 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100217230), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066076.1	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:2502   GCAGUUUUGAUCCAAAUUGUGUUG   2525 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0234M16 mRNA, complete cds	NA	coding protein	psRNATarget
BT038175.1	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:1253   GCAGUUUUGAUCCAAAUUGUGUUG   1276 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0216B06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143586.1	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:1253   GCAGUUUUGAUCCAAAUUGUGUUG   1276 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100217230), mRNA	NA	coding protein	psRNATarget
EU972948.1	ncRNA:24   AUAUGGGACUUGGUUUAACACAAC   1   ***====|||*||||||||||||| targets:1255   GCAGUUUUGAUCCAAAUUGUGUUG   1278 Target Full Sequence	3.0	Zea mays clone 390548 mRNA sequence	NA	coding protein	psRNATarget