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BaseInfo

ncRNA ID novel_zma_miR13645
Species Zea mays
Class miRNA
Genome position Chr2:63721194-63721392 [+]
Reference genome RefGen_v4
Source SRR5451006
Length 22
Mature sequence(if miRNA) 1 - CUGCGCACUCGCGGACCGUCCG - 22
Stem-loop(if miRNA) --       CUC      C     -  C UA    G     C    --    ----  C    -----A  GAACCCGAGCUCCCGCACCAGGUCGCGGACCGUCC
  CUGCGCA   GCGGAC GUCCG GC C  GGGC CGGAC GUCC  GGCC    GU AGGC      GG                                   G
  |||||||   |||||| ||||| || |  |||| ||||| ||||  ||||    || ||||      ||
  GACGUGU   CGCCUG CAGGC CG G  CCCG GCCUG CAGG  CCGG    CG UCCG      CG                                   G
GA       CCC      C     G  C UC    -     C    CG    ACCA  C    CCGCCG  AGAGACCAGUCUGCGCCUGCCAGGCGCCGUGUCCC
Stem-loop sequence CUGCGCACUCGCGGACCGUCCGGCCCUAGGGCGCGGACCGUCCGGCCGUCAGGCAGGGAACCCGAGCUCCCGCACCAGGUCGCGGACCGUCCGGCCCUGUGCCGCGGACCGUCCGCGUCUGACCAGAGAGCGCCGCCGCCUCGCACCAGGCCGCGGACCGUCCGGCCCCUGCGCGCGGACCGUCCGCCCCUGUGCAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943239.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:346   CGGACGGUCCGCGCGUGCGCAG   367

1.5 Zea mays clone 1589479 mRNA sequence NA coding protein psRNATarget
BT061906.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:287   CGGACGGUCCGCGCGUGCGCAG   308

1.5 Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds NA coding protein psRNATarget
EU974386.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:868   CGGACGGUCCGCGCGUGCGCAG   889

1.5 Zea mays clone 447822 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968855.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:795   CGGACGGUCCGCGCGUGCGCAG   816

1.5 Zea mays clone 324570 mRNA sequence NA coding protein psRNATarget
XM_020547963.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1129   CGGACGGUCCGCGCGUGCGCAG   1150

1.5 PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA NA coding protein psRNATarget
BT062567.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1334   CGGACGGUCCGCGCGUGCGCAG   1355

1.5 Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds NA coding protein psRNATarget
NM_001174685.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1334   CGGACGGUCCGCGCGUGCGCAG   1355

1.5 Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA NA coding protein psRNATarget
BT062568.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1459   CGGACGGUCCGCGCGUGCGCAG   1480

1.5 Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds NA coding protein psRNATarget
NM_001174686.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1459   CGGACGGUCCGCGCGUGCGCAG   1480

1.5 Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA NA coding protein psRNATarget
NM_001196968.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:783   CGGACGGUCCGCGCGUGCGCAG   804

1.5 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
BT088349.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:783   CGGACGGUCCGCGCGUGCGCAG   804

1.5 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
NM_001310588.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1444   CGGACGGUCCGCGCGUGCGCAG   1465

1.5 Zea mays uncharacterized LOC100272476 (IDP716), mRNA NA coding protein psRNATarget
NM_001196134.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1554   CGGACGGUCCGCGCGUGCGCAG   1575

1.5 Zea mays hypothetical protein (LOC100501411), mRNA NA coding protein psRNATarget
BT085255.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1554   CGGACGGUCCGCGCGUGCGCAG   1575

1.5 Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds NA coding protein psRNATarget
BT038788.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1526   CGGACGGUCCGCGCGUGCGCAG   1547

1.5 Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds NA coding protein psRNATarget
BT064749.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1755   CGGACGGUCCGCGCGUGCGCAG   1776

1.5 Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds NA coding protein psRNATarget
NM_001175289.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:1755   CGGACGGUCCGCGCGUGCGCAG   1776

1.5 Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA NA coding protein psRNATarget
XM_020539115.1
ncRNA:22   GCCUGCCAGGCGCUCACGCGUC   1
  |||||||||||||*||||||||
targets:2229   CGGACGGUCCGCGCGUGCGCAG   2250

1.5 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget
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