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BaseInfo

ncRNA ID novel_zma_miR13604
Species Zea mays
Class miRNA
Genome position Chr1:235344268-235344462 [-]
Reference genome RefGen_v4
Source SRR5451006
Length 22
Mature sequence(if miRNA) 1 - AUCUGGAUUCAAGGAAAGAUGU - 22
Stem-loop(if miRNA) --        C                     C    C            A                 U           C   --    C       G
  AUCUUUCC UGAAUCCAGAUCUUGAAAUAA CUAU UGUGUUUUAGCC GUCCACUUGAAGGUGAU GAUUGCUCUAA ACU  UUGG UGUUAAA A
  |||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||| |||  |||| |||||||
  UAGAAAGG ACUUAGGUCUAGAACUUUAUU GAUA ACACAAAAUCGG CAGGUGAACUUCCGCUA CUAACGAGAUU UGA  AAUU AUAGUUU U
UG        A                     U    U            A                 U           C   UU    -       U
Stem-loop sequence AUCUUUCCCUGAAUCCAGAUCUUGAAAUAACCUAUCUGUGUUUUAGCCAGUCCACUUGAAGGUGAUUGAUUGCUCUAACACUUUGGCUGUUAAAGAUUUUUGAUAUUAAUUAGUCUUAGAGCAAUCUAUCGCCUUCAAGUGGACAGGCUAAAACACAUAUAGUUUAUUUCAAGAUCUGGAUUCAAGGAAAGAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ095435.1
ncRNA:22   UGUAGAAAGGAACUUAGGUCUA   1
  *|*||||||||||||||||*|*
targets:56   UCCUCUUUCCUUGAAUCCAAAC   77

2.5 TSA: Zea mays contig31088, mRNA sequence NA coding protein psRNATarget