ncRNA ID | novel_zma_miR13604 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:235344268-235344462 [-] |
Reference genome | RefGen_v4 |
Source | SRR5451006 |
Length | 22 |
Mature sequence(if miRNA) | 1 - AUCUGGAUUCAAGGAAAGAUGU - 22 |
Stem-loop(if miRNA) |
--        C                     C    C            A                 U           C   --    C       G   AUCUUUCC UGAAUCCAGAUCUUGAAAUAA CUAU UGUGUUUUAGCC GUCCACUUGAAGGUGAU GAUUGCUCUAA ACU  UUGG UGUUAAA A   |||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||| |||  |||| |||||||   UAGAAAGG ACUUAGGUCUAGAACUUUAUU GAUA ACACAAAAUCGG CAGGUGAACUUCCGCUA CUAACGAGAUU UGA  AAUU AUAGUUU U UG        A                     U    U            A                 U           C   UU    -       U |
Stem-loop sequence | AUCUUUCCCUGAAUCCAGAUCUUGAAAUAACCUAUCUGUGUUUUAGCCAGUCCACUUGAAGGUGAUUGAUUGCUCUAACACUUUGGCUGUUAAAGAUUUUUGAUAUUAAUUAGUCUUAGAGCAAUCUAUCGCCUUCAAGUGGACAGGCUAAAACACAUAUAGUUUAUUUCAAGAUCUGGAUUCAAGGAAAGAUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ095435.1 |
|
2.5 | TSA: Zea mays contig31088, mRNA sequence | NA | coding protein | psRNATarget |