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BaseInfo

ncRNA ID	novel_zma_miR13600
Species	Zea mays
Class	miRNA
Genome position	Chr1:275586913-275586967 [-]
Reference genome	RefGen_v4
Source	SRR5451006
Length	24
Mature sequence(if miRNA)	1 - AAGCUGCUGCAGACUGCCAAACAC - 24
Stem-loop(if miRNA)	--    C   -U   -  -      C      GUUU GGC  UUU CA CAGCUU UGGC   |||| |||  ||| || |||||| |||C   CAAA CCG  AGA GU GUCGAA ACCA CA    -   UC   C  C      A
Stem-loop sequence	GUUUCGGCUUUUCACAGCUUCUGGCCACCAAAAGCUGCUGCAGACUGCCAAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961827.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||||||||||||||||| targets:1377   GCGUUUGGCAGUCUGCAGCAGCUU   1400 Target Full Sequence	0.0	Zea mays clone 238443 peptidase M48, Ste24p mRNA, complete cds	NA	coding protein	psRNATarget
BT061642.2	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   *||||||||||||*|||||||||| targets:1850   AUGUUUGGCAGUCCGCAGCAGCUU   1873 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ111561.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||||||*|||||||||| targets:147   GCGUUUGGCAGUCCGCAGCAGCUU   170 Target Full Sequence	1.5	TSA: Zea mays contig47222, mRNA sequence	NA	coding protein	psRNATarget
EZ054166.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||||||*|||||||||| targets:268   GCGUUUGGCAGUCCGCAGCAGCUU   291 Target Full Sequence	1.5	TSA: Zea mays contig55288, mRNA sequence	NA	coding protein	psRNATarget
EU947367.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||||||*|||||||||| targets:244   GCGUUUGGCAGUCCGCAGCAGCUU   267 Target Full Sequence	1.5	Zea mays clone 341166 mRNA sequence	NA	coding protein	psRNATarget
BT061432.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||*|||||||||||||||| targets:1157   GCGUUUGACAGUCUGCAGCAGCUU   1180 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0145K17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657517.2	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||||||*|||||||||| targets:2538   GCGUUUGGCAGUCCGCAGCAGCUU   2561 Target Full Sequence	1.5	PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971002.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||||=*||||||||||||| targets:1419   GCGUUUGGCGAUCUGCAGCAGCUU   1442 Target Full Sequence	2.0	Zea mays clone 355617 mRNA sequence	NA	coding protein	psRNATarget
EU951194.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   *||||||*|||||*|||||||||| targets:297   AUGUUUGACAGUCCGCAGCAGCUU   320 Target Full Sequence	2.5	Zea mays clone 689005 mRNA sequence	NA	coding protein	psRNATarget
BT042815.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   *||||||*|||||*|||||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0045N18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148703.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   *||||||*|||||*|||||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays General transcription factor IIH subunit 2 (LOC100274342), mRNA	NA	coding protein	psRNATarget
BT019104.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||*|||||*|||||||||| targets:757   GCGUUUGACAGUCCGCAGCAGCUU   780 Target Full Sequence	2.5	Zea mays clone Contig706.F mRNA sequence	NA	coding protein	psRNATarget
BT018867.1	ncRNA:24   CACAAACCGUCAGACGUCGUCGAA   1   |*|||||*|||||*|||||||||| targets:1582   GCGUUUGACAGUCCGCAGCAGCUU   1605 Target Full Sequence	2.5	Zea mays clone EL01N0561F02.d mRNA sequence	NA	coding protein	psRNATarget