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BaseInfo

ncRNA ID	novel_zma_miR13596
Species	Zea mays
Class	miRNA
Genome position	Chr4:136917839-136917998 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AUUCACCAGACUGUCCGAUGUGCA - 24
Stem-loop(if miRNA)	--AUU        --      A  UG        U        AA  --AA  GU ---   CA     ACG   GGC            CACCAGAC  UGUCCG UG  CACCGGAC GUCCGGUG  CC    CG  C   GGC  GGCCA   GUC   UGCGCGA      ||||||||  |||||| ||  |||||||| ||||||||  ||    ||  |   |||  |||||   |||   ||||||U      GUGGUCUG  ACAGGC AC  GUGGCCUG CAGGCCAC  GG    GC  G   CCG  CCGGU   CAG   GCGCGCC ACCGC        UG      C  GU        U        GG  GAGG  UG CAA   AG     GUA   --A
Stem-loop sequence	AUUCACCAGACUGUCCGAUGUGCACCGGACUGUCCGGUGAACCAACGGUCGGCCAGGCCAACGGUCGGCUGCGCGAUCCGCGCGAGACAUGUGGCCGAGCCAACGGUCGGGAGGGGGCACCGGACUGUCCGGUGUGCACCGGACAGUGUCUGGUGCGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940974.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*||||||||||||||||| targets:2772   UGCACACCGGACAGUCUGGUGAAU   2795 Target Full Sequence	1.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:603   UGCACACCGGACAGUCCGGUGAAU   626 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:739   UGCACACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:739   UGCACACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:700   UGCACACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:700   UGCACACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:564   UGCACACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:564   UGCACACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:412   UGCACACCGGACAGUCCGGUGAAU   435 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   ||||||*|||||||||*||||||| targets:4612   UGCACACCGGACAGUCCGGUGAAU   4635 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *|||||*|||||||||*||||||| targets:14   GGCACACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *|||||*|||||||||*||||||| targets:14   GGCACACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *|||||*|||||||||*||||||| targets:14   GGCACACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *|||||*|||||||||*||||||| targets:699   GGCACACCGGACAGUCCGGUGAAU   722 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *||*||||||||||||*||||||| targets:624   GGCUCAUCGGACAGUCCGGUGAAU   647 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AC-GUGUAGCCUGUCAGACCACUUA   1   ||-|*||||||||||||*||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAAU   724 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   ACGUGUAGCCUGUCAGACCACUUA   1   *||*||||||||||||*||||||| targets:624   GGCUCAUCGGACAGUCCGGUGAAU   647 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AC-GUGUAGCCUGUCAGACCACUUA   1   ||-|*||||||||||||*||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAAU   724 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   AC-GUGUAGCCUGUCAGACCACUUA   1   ||-|*||*|||||||||*||||||| targets:27   UGACUCACCGGACAGUCCGGUGAAU   51 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   ACGU-GUAGCCUGUCAGACCACUUA   1   |||*-||*|||||||||*||||||| targets:683   UGCUUCACCGGACAGUCCGGUGAAU   707 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget