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BaseInfo

ncRNA ID	novel_zma_miR13592
Species	Zea mays
Class	miRNA
Genome position	Chr4:136171135-136171180 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	23
Mature sequence(if miRNA)	24 - GUGACACUCGGCAAAGAAGACUC - 46
Stem-loop(if miRNA)	----G                 AC      UUCUUUGCCGAGUGUCA  U      |||||||||||||||||      AAGAAACGGCUCACAGU  A CUCAG                 GU
Stem-loop sequence	GUUCUUUGCCGAGUGUCAACUAUGUGACACUCGGCAAAGAAGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962802.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   |||*|||||||||||||||*||* targets:1097   GAGGCUUCUUUGCCGAGUGCCAA   1119 Target Full Sequence	2.5	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962802.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||*|*|*||||||||||||||* targets:980   AAGACAUGUUUGCCGAGUGUCAA   1002 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406203.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   ****||*|||||||||||||||| targets:47   AUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	1.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   ****||*|||||||||||||||| targets:47   AUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	1.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   ****||*|||||||||||||||| targets:47   AUAACUCCUUUGCCGAGUGUCAC   69 Target Full Sequence	1.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
BT067215.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||**|*|||||||||||||||= targets:1439   AAGCAUACUUUGCCGAGUGUCAU   1461 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||**|*|||||||||||||||= targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||**|*|||||||||||||||= targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052892.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   |******|||||||||||||||| targets:94   GCAAAGGCUUUGCCGAGUGUCAC   116 Target Full Sequence	3.0	TSA: Zea mays contig54013, mRNA sequence	NA	coding protein	psRNATarget
HI406041.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||-||*||||||||||||||*| targets:138   AAG-CUACUUUGCCGAGUGUCUC   159 Target Full Sequence	2.5	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238171.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||-||*||||||||||||||*| targets:138   AAG-CUACUUUGCCGAGUGUCUC   159 Target Full Sequence	2.5	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
JB166502.1	ncRNA:23   CUCAGAAGAAACGGCUCACAGUG   1   *||-||*||||||||||||||*| targets:138   AAG-CUACUUUGCCGAGUGUCUC   159 Target Full Sequence	2.5	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget