Search result

BaseInfo

ncRNA ID	novel_zma_miR13573
Species	Zea mays
Class	miRNA
Genome position	Chr8:178885905-178886110 [-]
Reference genome	RefGen_v4
Source	SRR5451006
Length	23
Mature sequence(if miRNA)	184 - AAAUAUAUGACAUCGUUGACUUU - 206
Stem-loop(if miRNA)	--          C              GAA          C             ----AA    UAAUAAGUUAUCAUUUAUUUUUUUAUGAUUUGUUUUAUCAC   AAAUAUAUGA AUCGUUGACUUUUU   AAAACUUUGA CACUCGUCUUAUU      AAAA                                         A   |||||||||| ||||||||||||||   |||||||||| |||||||||||||      ||||   UUUAUAUACU UGGCAACUGAAAAA   UUUUGAAACU GUGAGCAGAAUAA      UAAA                                         U UA          A              GAC          A             GUUUUA    UAAUUUUUUACAUUUUAAGAUUCAGUUUGUGUUUGUUGGAA
Stem-loop sequence	AAAUAUAUGACAUCGUUGACUUUUUGAAAAAACUUUGACCACUCGUCUUAUUAAAAAAUAAUAAGUUAUCAUUUAUUUUUUUAUGAUUUGUUUUAUCACAUAAGGUUGUUUGUGUUUGACUUAGAAUUUUACAUUUUUUAAUAAAUAUUUUGAAUAAGACGAGUGAUCAAAGUUUUCAGAAAAAGUCAACGGUAUCAUAUAUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008653624.2	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   ||||||||||=|||||||||||| targets:1928   AAAGUCAACGGUGUCAUAUAUUU   1950 Target Full Sequence	1.5	PREDICTED: Zea mays histone acetyltransferase 1 (hat1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403408.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   ||||||||||=|||||||||||| targets:195   AAAGUCAACGGUGUCAUAUAUUU   217 Target Full Sequence	1.5	Sequence 1533 from Patent EP2074227	NA	coding protein	psRNATarget
JB163869.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   ||||||||||=|||||||||||| targets:195   AAAGUCAACGGUGUCAUAUAUUU   217 Target Full Sequence	1.5	Sequence 1533 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235538.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   ||||||||||=|||||||||||| targets:195   AAAGUCAACGGUGUCAUAUAUUU   217 Target Full Sequence	1.5	Sequence 1533 from Patent EP2985353	NA	coding protein	psRNATarget
JB163865.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||||||||||*||||||||||| targets:192   AAAGUCAACGACGUCAUAUAUUU   214 Target Full Sequence	1.5	Sequence 1529 from Patent EP2559767	NA	coding protein	psRNATarget
HI403404.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||||||||||*||||||||||| targets:192   AAAGUCAACGACGUCAUAUAUUU   214 Target Full Sequence	1.5	Sequence 1529 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235534.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||||||||||*||||||||||| targets:192   AAAGUCAACGACGUCAUAUAUUU   214 Target Full Sequence	1.5	Sequence 1529 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235428.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*||||||=|||||||||||| targets:198   AAAUUCAACGGUGUCAUAUAUUU   220 Target Full Sequence	1.5	Sequence 1423 from Patent EP2985353	NA	coding protein	psRNATarget
JB163759.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*||||||=|||||||||||| targets:198   AAAUUCAACGGUGUCAUAUAUUU   220 Target Full Sequence	1.5	Sequence 1423 from Patent EP2559767	NA	coding protein	psRNATarget
HI403298.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*||||||=|||||||||||| targets:198   AAAUUCAACGGUGUCAUAUAUUU   220 Target Full Sequence	1.5	Sequence 1423 from Patent EP2074227	NA	coding protein	psRNATarget
EZ097470.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |=|||||||||||*||||||||| targets:21   AGAGUCAACGAUGACAUAUAUUU   43 Target Full Sequence	1.5	TSA: Zea mays contig33125, mRNA sequence	NA	coding protein	psRNATarget
XM_008658813.2	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*||||||||*|||||||||| targets:3761   AAAAUCAACGAUAUCAUAUAUUU   3783 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome P450 94C1 (LOC103636463), mRNA	NA	coding protein	psRNATarget
EU946212.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||||||||*|*||||||||||| targets:93   AAAGUCAACAACGUCAUAUAUUU   115 Target Full Sequence	2.5	Zea mays clone 300970 mRNA sequence	NA	coding protein	psRNATarget
BT017322.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*|||||*=|||||||||||| targets:814   AAAAUCAACAGUGUCAUAUAUUU   836 Target Full Sequence	2.5	Zea mays clone EL01N0319E06.c mRNA sequence	NA	coding protein	psRNATarget
BT017322.1	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*|||||*=|||||||||||| targets:861   AAAAUCAACAGUGUCAUAUAUUU   883 Target Full Sequence	2.5	Zea mays clone EL01N0319E06.c mRNA sequence	NA	coding protein	psRNATarget
BT068818.2	ncRNA:23   UUUCAGUUGCUACAGUAUAUAAA   1   |||*|||||*=|||||||||||| targets:13   AAAAUCAACUGUGUCAUAUAUUU   35 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0022H20 mRNA, complete cds	NA	coding protein	psRNATarget
BT068816.1	ncRNA:23   UUU-CAGUUGCUACAGUAUAUAAA   1   |=|-|*=|||*||||||||||||| targets:1810   AGAUGAUAACAAUGUCAUAUAUUU   1833 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0015J05 mRNA, complete cds	NA	coding protein	psRNATarget
BT083557.1	ncRNA:23   UUU-CAGUUGCUACAGUAUAUAAA   1   |=|-|*=|||*||||||||||||| targets:1595   AGAUGAUAACAAUGUCAUAUAUUU   1618 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0011L15 mRNA, complete cds	NA	coding protein	psRNATarget