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BaseInfo

ncRNA ID	novel_zma_miR13565
Species	Zea mays
Class	miRNA
Genome position	Chr7:29204260-29204346 [+]
Reference genome	RefGen_v4
Source	SRR5451006;SRR1997866
Length	22
Mature sequence(if miRNA)	66 - AGAAGCUGCAUCUGAGCGGCGA - 87
Stem-loop(if miRNA)	--      --     U  UGA      U  -U  UG   AAU   U   GCUGCU  GGUGC GU   UUCUGC AG  UU  CUG   CUG U   ||||||  ||||| ||   |||||| ||  ||  |||   ||| G   CGGCGA  CUACG CG   AAGAUG UC  GA  GAU   GAC A AG      GU     U  ---      U  CU  GU   ACU   A
Stem-loop sequence	GCUGCUGGUGCUGUUGAUUCUGCUAGUUUUGCUGAAUCUGUUGAACAGUCAUAGUGAGUCCUUGUAGAAGCUGCAUCUGAGCGGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008655587.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   ||*||||||||||||||*|||| targets:407   UCACCGCUCAGAUGCAGAUUCU   428 Target Full Sequence	1.5	PREDICTED: Zea mays nucleophosmin-like (LOC103633929), mRNA	NA	coding protein	psRNATarget
XM_020542269.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   ||||**|||||||||||||||| targets:14   UCGCAUCUCAGAUGCAGCUUCU   35 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109941395 (LOC109941395), mRNA	NA	coding protein	psRNATarget
XM_020547070.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   |||||||*||||||||*||||| targets:14   UCGCCGCACAGAUGCAACUUCU   35 Target Full Sequence	2.5	PREDICTED: Zea mays TPR-containing protein DDB_G0280363-like (LOC103644371), mRNA	NA	coding protein	psRNATarget
XM_020550124.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *||*||=||||||||||||||* targets:629   ACGACGUUCAGAUGCAGCUUCA   650 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103649763 (LOC103649763), mRNA	NA	coding protein	psRNATarget
XM_008675850.2	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *||*||=||||||||||||||* targets:69   ACGACGUUCAGAUGCAGCUUCA   90 Target Full Sequence	3.0	PREDICTED: Zea mays protein ZINC INDUCED FACILITATOR-LIKE 1-like (LOC103650238), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675852.2	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *||*||=||||||||||||||* targets:68   ACGACGUUCAGAUGCAGCUUCA   89 Target Full Sequence	3.0	PREDICTED: Zea mays protein ZINC INDUCED FACILITATOR-LIKE 1-like (LOC103650238), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001143205.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *||*||=||||||||||||||* targets:587   ACGACGUUCAGAUGCAGCUUCA   608 Target Full Sequence	3.0	Zea mays uncharacterized LOC100216807 (LOC100216807), mRNA	NA	coding protein	psRNATarget
BT037379.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *||*||=||||||||||||||* targets:587   ACGACGUUCAGAUGCAGCUUCA   608 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0167A11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673275.1	ncRNA:22   AGCGGCGAGUCUACGUCGAAGA   1   *=*|=||||||||||||||*|| targets:131   CUACUGCUCAGAUGCAGCUGCU   152 Target Full Sequence	2.5	PREDICTED: Zea mays rho GTPase-activating protein 17-like (LOC103648895), mRNA	NA	coding protein	psRNATarget