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BaseInfo

ncRNA ID novel_zma_miR13564
Species Zea mays
Class miRNA
Genome position Chr7:28608440-28608499 [+]
Reference genome RefGen_v4
Source SRR5451006
Length 24
Mature sequence(if miRNA) 37 - CGCGCGGCUGUAGUGGCGCGGCGU - 60
Stem-loop(if miRNA) --  G     G        G    A     U
  GC CGUGC ACUGUAGU GUGC GCAUG U
  || ||||| |||||||| |||| |||||
  CG GCGCG UGAUGUCG CGCG CGUGC C
UG  -     G        G    -     G
Stem-loop sequence GCGCGUGCGACUGUAGUGGUGCAGCAUGUUCGCGUGCGCGCGGCUGUAGUGGCGCGGCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU955467.1
ncRNA:24   UGCGGCGCGGUGAUGUCGGCGCGC   1
  =|||||||||*|||||||||=|||
targets:2639   GCGCCGCGCCUCUACAGCCGUGCG   2662

2.5 Zea mays clone 1533319 mRNA sequence NA coding protein psRNATarget
EU942868.1
ncRNA:24   UGCGGCGCGGUGAUGUCGGCGCGC   1
  =||*||||||*||||*||||||||
targets:145   GCGGCGCGCCUCUACUGCCGCGCG   168

2.5 Zea mays clone 1542450 mRNA sequence NA coding protein psRNATarget