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BaseInfo

ncRNA ID novel_zma_miR13558
Species Zea mays
Class miRNA
Genome position Chr7:117000978-117001041 [+]
Reference genome RefGen_v4
Source SRR5451006;SRR1997866
Length 22
Mature sequence(if miRNA) 43 - CUCCGGUGUAGAGAUCAAGGGC - 64
Stem-loop(if miRNA) --G     -     A    C     -   G   A
   CUUGA CUCUA CAUC GAGGC UCC UCA G
   ||||| ||||| |||| ||||| ||| |||
   GAACU GAGAU GUGG CUCCG AGG GGU U
CGG     A     -    C     C   -   U
Stem-loop sequence GCUUGACUCUAACAUCCGAGGCUCCGUCAAGUUUGGGGACGCCUCCGGUGUAGAGAUCAAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950431.1
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:712   UCUCUAGUUCUCUACACCGGAG   733

2.0 Zea mays clone 490958 mRNA sequence NA coding protein psRNATarget
BT069423.1
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:1393   UCUCUAGUUCUCUACACCGGAG   1414

2.0 Zea mays full-length cDNA clone ZM_BFb0140M03 mRNA, complete cds NA coding protein psRNATarget
NM_001176761.1
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:1393   UCUCUAGUUCUCUACACCGGAG   1414

2.0 Zea mays eukaryotic translation initiation factor 2 (eIF-2) family protein (pco073635), mRNA NA coding protein psRNATarget
AY106248.2
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:1820   UCUCUAGUUCUCUACACCGGAG   1841

2.0 Zea mays PCO073635 mRNA sequence NA coding protein psRNATarget
EU950996.1
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:2544   UCUCUAGUUCUCUACACCGGAG   2565

2.0 Zea mays clone 679073 mRNA sequence NA coding protein psRNATarget
XM_008657093.2
ncRNA:22   CGGGAACUAGAGAUGUGGCCUC   1
  *|=||*|*||||||||||||||
targets:4135   UCUCUAGUUCUCUACACCGGAG   4156

2.0 PREDICTED: Zea mays eukaryotic translation initiation factor 2 (eIF-2) family protein (pco073635), transcript variant X1, mRNA NA coding protein psRNATarget
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