Search result

BaseInfo

ncRNA ID novel_zma_miR13555
Species Zea mays
Class miRNA
Genome position Chr6:4709920-4709972 [+]
Reference genome RefGen_v4
Source SRR5451006
Length 24
Mature sequence(if miRNA) 1 - GGACGCUUAAUCGGACGAUCUGGA - 24
Stem-loop(if miRNA) --     -  UA       GA     A
  GGACG CU  AUCGGAC  UCUGG U
  ||||| ||  |||||||  |||||
  CCUGC GA  UAGUCUG  AGACC G
GA     U  GC       AA     A
Stem-loop sequence GGACGCUUAAUCGGACGAUCUGGAUGACCAGAAAGUCUGAUCGAGUCGUCCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT060872.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:889   UUCAAGUCGUCCGAUUAAUCGUCC   912

2.5 Zea mays full-length cDNA clone ZM_BFb0064D21 mRNA, complete cds NA coding protein psRNATarget
NM_001165773.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:889   UUCAAGUCGUCCGAUUAAUCGUCC   912

2.5 Zea mays uncharacterized LOC100304334 (LOC100304334), mRNA NA coding protein psRNATarget
EU943325.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:686   UUCAAGUCGUCCGAUUAAUCGUCC   709

2.5 Zea mays clone 1599709 mRNA sequence NA coding protein psRNATarget
XM_020539214.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:1723   UUCAAGUCGUCCGAUUAAUCGUCC   1746

2.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539213.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:1723   UUCAAGUCGUCCGAUUAAUCGUCC   1746

2.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539212.1
ncRNA:24   AGGUCUAGCAGGCUAAUUCGCAGG   1
  |=||*=||||||||||||*|||||
targets:1723   UUCAAGUCGUCCGAUUAAUCGUCC   1746

2.5 PREDICTED: Zea mays DBF1-interactor protein 1 (DIP1), transcript variant X3, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.