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BaseInfo

ncRNA ID novel_zma_miR13553
Species Zea mays
Class miRNA
Genome position Chr6:68454717-68454765 [-]
Reference genome RefGen_v4
Source SRR5451006;SRR2089705
Length 24
Mature sequence(if miRNA) 1 - AUCUCGUUUCUGUGGAGCCAGGCU - 24
Stem-loop(if miRNA) --CUA      -  U     -   CC
     GGCUCC CA GAAAC AGA  U
     |||||| || ||||| |||
     CCGAGG GU CUUUG UCU  U
UCGGA      U  -     C   AG
Stem-loop sequence CUAGGCUCCCAUGAAACAGACCUUGAUCUCGUUUCUGUGGAGCCAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001322109.1
ncRNA:24   UCGGACCGAGGUGUCUUUGCUCUA   1
  |||||||||||||||=||||||||
targets:1167   AGCCUGGCUCCACAGGAACGAGAU   1190

1.5 Zea mays Dormancy-associated protein homolog 3 (LOC100192502), transcript variant 1, mRNA NA coding protein psRNATarget
EU964946.1
ncRNA:24   UCGGACCGAGGUGUCUUUGCUCUA   1
  |||||||||||||||=||||||||
targets:1167   AGCCUGGCUCCACAGGAACGAGAU   1190

1.5 Zea mays clone 282725 auxin-repressed protein mRNA, complete cds NA coding protein psRNATarget