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BaseInfo

ncRNA ID	novel_zma_miR13549
Species	Zea mays
Class	miRNA
Genome position	Chr6:110299240-110299292 [-]
Reference genome	RefGen_v4
Source	SRR5451006
Length	24
Mature sequence(if miRNA)	30 - GAGCGACUUGUAGAUGAUGUCGGA - 53
Stem-loop(if miRNA)	--   -  A    -   A    G  GGA   GAG CG CUUG UAG UGAU UC   G   ||| || |||| ||| |||| ||   U   UUC GC GAGC AUC ACUA AG   U AG   A  -    C   A    -  AUU
Stem-loop sequence	GAGCGACUUGUAGAUGAUGUCGGAGUUUUAGAAUCAACUACCGAGCGACUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545888.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:261   UCCU-CACCAUCUGCAAGUCGCUC   283 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103641408 (LOC103641408), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548643.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:300   UCCU-CACCAUCUGCAAGUCGCUC   322 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial adenine nucleotide transporter ADNT1-like (LOC103649350), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU966782.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:263   UCCU-CACCAUCUGCAAGUCGCUC   285 Target Full Sequence	2.5	Zea mays clone 297371 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548644.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:318   UCCU-CACCAUCUGCAAGUCGCUC   340 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial adenine nucleotide transporter ADNT1-like (LOC103649350), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT018214.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:107   UCCU-CACCAUCUGCAAGUCGCUC   129 Target Full Sequence	2.5	Zea mays clone EL01N0561A03.c mRNA sequence	NA	coding protein	psRNATarget
EU963079.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:240   UCCU-CACCAUCUGCAAGUCGCUC   262 Target Full Sequence	2.5	Zea mays clone 257288 Grave disease carrier protein mRNA, complete cds	NA	coding protein	psRNATarget
BT043266.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:188   UCCU-CACCAUCUGCAAGUCGCUC   210 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0137J18 mRNA, complete cds	NA	coding protein	psRNATarget
BT054063.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:173   UCCU-CACCAUCUGCAAGUCGCUC   195 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0161F19 mRNA, complete cds	NA	coding protein	psRNATarget
BT039836.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:228   UCCU-CACCAUCUGCAAGUCGCUC   250 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0046L21 mRNA, complete cds	NA	coding protein	psRNATarget
BT041203.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:224   UCCU-CACCAUCUGCAAGUCGCUC   246 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0188I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136736.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:220   UCCU-CACCAUCUGCAAGUCGCUC   242 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191302 (IDP800), mRNA	NA	coding protein	psRNATarget
BT033353.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:220   UCCU-CACCAUCUGCAAGUCGCUC   242 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034K06 mRNA, complete cds	NA	coding protein	psRNATarget
AY108334.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:227   UCCU-CACCAUCUGCAAGUCGCUC   249 Target Full Sequence	2.5	Zea mays PCO146922 mRNA sequence	NA	coding protein	psRNATarget
EU975415.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:265   UCCU-CACCAUCUGCAAGUCGCUC   287 Target Full Sequence	2.5	Zea mays clone 489877 mRNA sequence	NA	coding protein	psRNATarget
BT053911.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:191   UCCU-CACCAUCUGCAAGUCGCUC   213 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0040H14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152273.1	ncRNA:24   AGGCUGUAGUAGAUGUUCAGCGAG   1   |||*-||*|||||=|||||||||| targets:191   UCCU-CACCAUCUGCAAGUCGCUC   213 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279252 (LOC100279252), mRNA	NA	coding protein	psRNATarget