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BaseInfo

ncRNA ID	novel_zma_miR13547
Species	Zea mays
Class	miRNA
Genome position	Chr6:135238669-135238834 [-]
Reference genome	RefGen_v4
Source	SRR5451006
Length	24
Mature sequence(if miRNA)	143 - AGGGAAUGUUUGGUUUAUAGAGAC - 166
Stem-loop(if miRNA)	--   GA           A             ----       -----C  CAU        C       -------      -          AGG  AUGUUUGGUUU UAGAGACUAAUUU    UUACUCU      UC   UUUUAUUC CUAAAUU       GCGAAA CUAAAAUA   |||  ||||||||||| |||||||||||||    |||||||      ||   |||||||| |||||||       |||||| |||||||G   UCC  UACAAACCAAA AUUUCUGAUUAAA    AGUGAGA      AG   AAAAUAAG GAUUUAG       UGCUUU GAUUUUGA AA   AC           G             CAUC       UAAAAU  AAC        A       UAGCUUA      U
Stem-loop sequence	AGGGAAUGUUUGGUUUAUAGAGACUAAUUUUUACUCUCUCCAUUUUUAUUCCCUAAAUUGCGAAACUAAAAUAGAGUUUUAGUUUUCGUAUUCGAUGAUUUAGAGAAUAAAACAAGAUAAAAUAGAGUGACUACAAAUUAGUCUUUAGAAACCAAACAUCACCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ060524.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |||*||||||||||||||*||||| targets:196   GUCCCUAUAAACCAAACACUCCCU   219 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
BT062019.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |*|||||*|||||||||||||||* targets:2412   GCCUCUAGAAACCAAACAUUCCCG   2435 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174508.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |*|||||*|||||||||||||||* targets:2412   GCCUCUAGAAACCAAACAUUCCCG   2435 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100381696), mRNA	NA	coding protein	psRNATarget
XM_008674864.2	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |*|||||*|||||||||||||||* targets:2353   GCCUCUAGAAACCAAACAUUCCCG   2376 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549827.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |*|||||*|||||||||||||||* targets:1978   GCCUCUAGAAACCAAACAUUCCCG   2001 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   *||*|||||||||||||||*|||| targets:326   AUCCCUAUAAACCAAACAUCCCCU   349 Target Full Sequence	1.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
XM_020547054.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |||*|||*||||||||||*||||| targets:435   GUCCCUAAAAACCAAACACUCCCU   458 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547054.1	ncRNA:24   CAGAGAUA-UUUGGUUUGUAAGGGA   1   *||-|||*-|||||||||||||||| targets:461   AUC-CUACCAAACCAAACAUUCCCU   484 Target Full Sequence	3.0	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547055.1	ncRNA:24   CAGAGAUAUUUGGUUUGUAAGGGA   1   |||*|||*||||||||||*||||| targets:433   GUCCCUAAAAACCAAACACUCCCU   456 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547055.1	ncRNA:24   CAGAGAUA-UUUGGUUUGUAAGGGA   1   *||-|||*-|||||||||||||||| targets:459   AUC-CUACCAAACCAAACAUUCCCU   482 Target Full Sequence	3.0	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA	NA	coding protein	psRNATarget