Search result

BaseInfo

ncRNA ID	novel_zma_miR13544
Species	Zea mays
Class	miRNA
Genome position	Chr6:2134669-2134714 [+]
Reference genome	RefGen_v4
Source	SRR5451006
Length	23
Mature sequence(if miRNA)	24 - CGCGCGGGCGCGCGGCGAGCGGG - 46
Stem-loop(if miRNA)	--G        -   G     G     GUUCGUCG GUG UCGUG GC    |||||||| ||| ||||| |G    CGAGCGGC CGC GGCGC CG GGG        G   G     G
Stem-loop sequence	GGUUCGUCGGUGGUCGUGGGCGGCGCGCGGGCGCGCGGCGAGCGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544513.1	ncRNA:23   GGGCGAGCGGCGCGCGGGCGCGC   1   ||||||||||||*|||||||||| targets:527   CCCGCUCGCCGCUCGCCCGCGCG   549 Target Full Sequence	1.5	PREDICTED: Zea mays transcription initiation factor TFIID subunit 4-like (LOC109942464), mRNA	NA	coding protein	psRNATarget
XM_020544513.1	ncRNA:23   GG-GCGAGCGGCGCGCGGGCGCGC   1   ||-|||||||||=||||||||||| targets:491   CCGCGCUCGCCGUGCGCCCGCGCG   514 Target Full Sequence	1.5	PREDICTED: Zea mays transcription initiation factor TFIID subunit 4-like (LOC109942464), mRNA	NA	coding protein	psRNATarget
XM_020542740.1	ncRNA:23   GGGCGAGCGGCGCGCGGGCGCGC   1   *||||*|||=||||||||||||| targets:395   GCCGCGCGCUGCGCGCCCGCGCG   417 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109941609 (LOC109941609), mRNA	NA	coding protein	psRNATarget
AY104984.1	ncRNA:23   GGGCGAG-CGGCGCGCGGGCGCGC   1   |=|*|||-|||||||||||||||| targets:157   CUCCCUCCGCCGCGCGCCCGCGCG   180 Target Full Sequence	2.0	Zea mays PCO121949 mRNA sequence	NA	coding protein	psRNATarget
BT065411.1	ncRNA:23   GGGCGAG-CGGCGCGCGGGCGCGC   1   |=|*|||-|||||||||||||||| targets:187   CUCCCUCCGCCGCGCGCCCGCGCG   210 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0146G15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153265.1	ncRNA:23   GGGCGAG-CGGCGCGCGGGCGCGC   1   |=|*|||-|||||||||||||||| targets:369   CUCCCUCCGCCGCGCGCCCGCGCG   392 Target Full Sequence	2.0	Zea mays putative ubiquitin carboxyl-terminal hydrolase superfamily protein (LOC100280339), mRNA	NA	coding protein	psRNATarget
BT056040.1	ncRNA:23   GGGCGAG-CGGCGCGCGGGCGCGC   1   |=|*|||-|||||||||||||||| targets:369   CUCCCUCCGCCGCGCGCCCGCGCG   392 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0157K18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:23   GGGCG-AGCGGCGCGCGGGCGCGC   1   =||||-||||*||||||||||||| targets:2   UCCGCCUCGCAGCGCGCCCGCGCG   25 Target Full Sequence	3.0	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget