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BaseInfo

ncRNA ID novel_zma_miR13535
Species Zea mays
Class miRNA
Genome position Chr10:76498857-76498975 [+]
Reference genome RefGen_v4
Source SRR5451006
Length 24
Mature sequence(if miRNA) 96 - AGUGGAAUAAAAUAGAGGGACUAA - 119
Stem-loop(if miRNA) --        CAA                 AC        C              A   
  AGUCCCUC   UUUAUUCCACUUUAGUC  UAAAUUGU AAAUAUGGAAACUA AAUA
  ||||||||   |||||||||||||||||  |||||||| |||||||||||||| |||G
  UCAGGGAG   AAAUAAGGUGAAAUCAG  AUUUAACG UUUAUACCUUUGAU UUGA
AA        AUA                 AU        U              A   
Stem-loop sequence AGUCCCUCCAAUUUAUUCCACUUUAGUCACUAAAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUAGAGGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647122.2
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||||
targets:2987   UUAGUCCCUCCAUUUUAUUCCACU   3010

1.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||||
targets:2598   UUAGUCCCUCCAUUUUAUUCCACU   2621

1.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||||
targets:480   UUAGUCCCUCCAUUUUAUUCCACU   503

1.0 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
HI406713.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
HI406419.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|||||||||||=|
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
XM_008660555.2
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  |||||||||**|||||||||||||
targets:1915   UUAGUCCCUACAUUUUAUUCCACU   1938

2.0 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552869.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|*|||||||||||
targets:1657   UUAGUCCCUCCAAUUUAUUCCACU   1680

2.5 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550132.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  ||||||||||*|*|||||||||||
targets:18   UUAGUCCCUCCAAUUUAUUCCACU   41

2.5 PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   AAUCAGGGAGAUAAAAUAAGGUGA   1
  |||||||=|**|||||||||||||
targets:1268   UUAGUCCUUACAUUUUAUUCCACU   1291

3.0 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
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