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BaseInfo

ncRNA ID	novel_zma_miR13502
Species	Zea mays
Class	miRNA
Genome position	Chr4:207598249-207598410 [-]
Reference genome	RefGen_v4
Source	SRR5451006
Length	22
Mature sequence(if miRNA)	1 - UCCAGGCUGGAGCUGAUGACGG - 22
Stem-loop(if miRNA)	---GA      -  U       -      -CCUUC   UU       G      C   -     CUC    --CA   C    -        AUCGGC CU GCCUGGG GAUAGA      AGU  GUGCUCG CCAGUU UCU UGGGA   CCGG    UAU CGCA GGU      |||||| || ||||||| ||||||      |||  ||||||| |||||| ||| |||||   ||||    ||| |||| ||U      UAGUCG GG CGGACCU CUGUUU      UCG  CGCGAGC GGUCAA AGA GUUCU   GGCU    AUA GCGU CCG GGCAG      A  U       G      AUCCUU   --       A      -   C     AUU    CUAC   A    A
Stem-loop sequence	GAAUCGGCCUUGCCUGGGGAUAGACCUUCAGUUUGUGCUCGGCCAGUUCUCUUGGGACUCCCGGCAUAUCCGCAGGUUGCCAUGCGAAUACAUCUCGGUUAUCUUGCAGAAACUGGACGAGCGCGCUUUCCUAUUUGUCGUCCAGGCUGGAGCUGAUGACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054940.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:403   AGGUCAUCAGCUCCAGCAUGGU   424 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0078C11 mRNA, complete cds	NA	coding protein	psRNATarget
BT043041.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:406   AGGUCAUCAGCUCCAGCAUGGU   427 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086H07 mRNA, complete cds	NA	coding protein	psRNATarget
EU972784.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:663   AGGUCAUCAGCUCCAGCAUGGU   684 Target Full Sequence	2.5	Zea mays clone 387880 ureide permease 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT055827.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:718   AGGUCAUCAGCUCCAGCAUGGU   739 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0220P22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152980.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:577   AGGUCAUCAGCUCCAGCAUGGU   598 Target Full Sequence	2.5	Zea mays Ureide permease 5 (TIDP3621), mRNA	NA	coding protein	psRNATarget
BT055425.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:577   AGGUCAUCAGCUCCAGCAUGGU   598 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0182L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT066060.1	ncRNA:22   GGCAGUAGUCGAGGUCGGACCU   1   **|||||||||||||||*|||* targets:662   AGGUCAUCAGCUCCAGCAUGGU   683 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0217I18 mRNA, complete cds	NA	coding protein	psRNATarget