Search result

BaseInfo

ncRNA ID	novel_zma_miR13492
Species	Zea mays
Class	miRNA
Genome position	Chr3:4887923-4888010 [+]
Reference genome	RefGen_v4
Source	SRR5451006
Length	24
Mature sequence(if miRNA)	65 - UCGGGUUCGGGUUCGGGUUCGGUU - 88
Stem-loop(if miRNA)	CCGAA                     ---                 A      AACCGAACCCGAACCCGAACC   GAACCCGAAUAGACCGA U      |||||||||||||||||||||   |||||||||||||||||      UUGGCUUGGGCUUGGGCUUGG   UUUGGGCUUAUCUGGUU U -----                     GCU                 G
Stem-loop sequence	CCGAAAACCGAACCCGAACCCGAACCGAACCCGAAUAGACCGAAUUGUUGGUCUAUUCGGGUUUUCGGGUUCGGGUUCGGGUUCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ055397.1	ncRNA:24   UUGGCUUGGGCUUGGGCUUGGGCU   1   =|||||||||||=||||||||||| targets:7   GACCGAACCCGAGCCCGAACCCGA   30 Target Full Sequence	1.5	TSA: Zea mays contig56519, mRNA sequence	NA	coding protein	psRNATarget
XM_008679799.2	ncRNA:24   UUGGCUUGGGCUUGGGCUUGGGCU   1   *==|||||||||||||||=||||| targets:1893   CGUCGAACCCGAACCCGAGCCCGA   1916 Target Full Sequence	1.5	PREDICTED: Zea mays leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (LOC103652819), mRNA	NA	coding protein	psRNATarget
BT085051.2	ncRNA:24   UUGGCUUGGGCUUGGGCUUGGGCU   1   ====*||||||||||||||||||| targets:733   GGUUUAACCCGAACCCGAACCCGA   756 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0234H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT018603.1	ncRNA:24   UUGG--CUU--GGGCUUGGGCUUGGGCU   1   ||||--|||--||||||||||||||||| targets:596   AACCCGGAAUACCCGAACCCGAACCCGA   623 Target Full Sequence	2.5	Zea mays clone EL01N0449F05.d mRNA sequence	NA	coding protein	psRNATarget
BT065558.2	ncRNA:24   UUGG----CUUGGGCUUGGGCUUGGGCU   1   ||||----|||||||||||||||||*|| targets:1364   AACCUCACGAACCCGAACCCGAACCGGA   1391 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0282D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT036992.1	ncRNA:24   UUG--G--CUUGGGCUUGGGCUUGGGCU   1   |||--|--||=|||||=||||||||||| targets:26   AACAGCAGGAGCCCGAGCCCGAACCCGA   53 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0150K09 mRNA, complete cds	NA	coding protein	psRNATarget
EU962368.1	ncRNA:24   UUG--G--CUUGGGCUUGGGCUUGGGCU   1   |||--|--||=|||||=||||||||||| targets:66   AACAGCAGGAGCCCGAGCCCGAACCCGA   93 Target Full Sequence	2.5	Zea mays clone 242094 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150244.1	ncRNA:24   UUG--G--CUUGGGCUUGGGCUUGGGCU   1   |||--|--||=|||||=||||||||||| targets:66   AACAGCAGGAGCCCGAGCCCGAACCCGA   93 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276457 (LOC100276457), mRNA	NA	coding protein	psRNATarget
BT069275.1	ncRNA:24   UUG--G--CUUGGGCUUGGGCUUGGGCU   1   |||--|--||=|||||=||||||||||| targets:50   AACAGCAGGAGCCCGAGCCCGAACCCGA   77 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0041M22 mRNA, complete cds	NA	coding protein	psRNATarget
EU962284.1	ncRNA:24   UUGG-CUUGGGCUUGGGCUUGGGCU   1   ||||-||*|||||||||*||||||| targets:310   AACCAGAUCCCGAACCCCAACCCGA   334 Target Full Sequence	2.5	Zea mays clone 241521 60S ribosomal protein L37a mRNA, complete cds	NA	coding protein	psRNATarget