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BaseInfo

ncRNA ID	novel_zma_miR13470
Species	Zea mays
Class	miRNA
Genome position	Chr2:80790832-80790917 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - AAAGGAGGAUAGGUCCCACCCGCA - 24
Stem-loop(if miRNA)	--     A     G        C      AA  AAUAC   UA   AAAGG GGAUA GUCCCACC GCAGGU  AU     AAC  A   ||||| ||||| |||||||| ||||||  ||     |||   UUUCC CUUAU CGGGGUGG CGUCCA  UG     UUG  A UU     A     A        A      GG  GCCUA   CA
Stem-loop sequence	AAAGGAGGAUAGGUCCCACCCGCAGGUAAAUAAUACAACUAAAACGUUAUCCGGUGGACCUGCAGGUGGGGCAUAUUCACCUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238138.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |||*||||||==|||||||||||| targets:66   UGCAGGUGGGGUCUAUCCUCCUUU   89 Target Full Sequence	2.5	Sequence 4133 from Patent EP2985353	NA	coding protein	psRNATarget
JB166469.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |||*||||||==|||||||||||| targets:66   UGCAGGUGGGGUCUAUCCUCCUUU   89 Target Full Sequence	2.5	Sequence 4133 from Patent EP2559767	NA	coding protein	psRNATarget
HI406008.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |||*||||||==|||||||||||| targets:66   UGCAGGUGGGGUCUAUCCUCCUUU   89 Target Full Sequence	2.5	Sequence 4133 from Patent EP2074227	NA	coding protein	psRNATarget
HI403228.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   ||||||*|||||||||||||*||| targets:91   UGCGGGAGGGACCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
JB163689.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   ||||||*|||||||||||||*||| targets:91   UGCGGGAGGGACCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   ||||||*|||||||||||||*||| targets:91   UGCGGGAGGGACCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
EZ073016.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |||*||||||=|||||||*||||| targets:21   UGCAGGUGGGGCCUAUCCACCUUU   44 Target Full Sequence	2.5	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
LQ238191.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   **|*||||||==|||||||||||| targets:35   AUCAGGUGGGGUCUAUCCUCCUUU   58 Target Full Sequence	2.5	Sequence 4186 from Patent EP2985353	NA	coding protein	psRNATarget
JB166522.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   **|*||||||==|||||||||||| targets:35   AUCAGGUGGGGUCUAUCCUCCUUU   58 Target Full Sequence	2.5	Sequence 4186 from Patent EP2559767	NA	coding protein	psRNATarget
HI406061.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   **|*||||||==|||||||||||| targets:35   AUCAGGUGGGGUCUAUCCUCCUUU   58 Target Full Sequence	2.5	Sequence 4186 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547635.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:2526   UACAGGUGGGGUCUAUCCUCCUUU   2549 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547631.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:3426   UACAGGUGGGGUCUAUCCUCCUUU   3449 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547630.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:3443   UACAGGUGGGGUCUAUCCUCCUUU   3466 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547634.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:4301   UACAGGUGGGGUCUAUCCUCCUUU   4324 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547633.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:4304   UACAGGUGGGGUCUAUCCUCCUUU   4327 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547632.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:4322   UACAGGUGGGGUCUAUCCUCCUUU   4345 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547629.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||==|||||||||||| targets:4324   UACAGGUGGGGUCUAUCCUCCUUU   4347 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163804.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:91   UACAGGUGGGGCCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
JB163804.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:145   UACAGGUGGGGCCUAUCCUCAUUU   168 Target Full Sequence	2.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:91   UACAGGUGGGGCCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:145   UACAGGUGGGGCCUAUCCUCAUUU   168 Target Full Sequence	2.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
HI403343.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:91   UACAGGUGGGGCCUAUCCUCAUUU   114 Target Full Sequence	2.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
HI403343.1	ncRNA:24   ACGCCCACCCUGGAUAGGAGGAAA   1   |*|*||||||=|||||||||*||| targets:145   UACAGGUGGGGCCUAUCCUCAUUU   168 Target Full Sequence	2.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget