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BaseInfo

ncRNA ID novel_zma_miR13467
Species Zea mays
Class miRNA
Genome position Chr2:76095712-76095783 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - GGUGCUCUCUGCACAGGCGCGGAU - 24
Stem-loop(if miRNA) -- G     U    A  G        G    GC    
  G UGCUC CUGC CA GCGCGGAU GUCC  GGCCA
  | ||||| |||| || |||||||| ||||  ||||G
  C GCGGG GACG GU CGCGCCUG CAGG  CCGGG
AG G     -    C  A        G    --    
Stem-loop sequence GGUGCUCUCUGCACAGGCGCGGAUGGUCCGCGGCCAGGGGCCGGACGGUCCGCGCAUGCGCAGGGGCGGCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ067064.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||*|||||||||||=|||||
targets:39   GUCCGCCCCUGUGCAGAGGGCACC   62

2.5 TSA: Zea mays contig02698, mRNA sequence NA coding protein psRNATarget
BT088349.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||*|||||||||||=|||||
targets:1351   GUCCGCCCCUGUGCAGAGGGCACC   1374

2.5 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
NM_001196968.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||*|||||||||||=|||||
targets:1351   GUCCGCCCCUGUGCAGAGGGCACC   1374

2.5 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
EU948904.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||*||||||*||||||||||
targets:531   GUCCGCCCCUGUGAAGAGAGCACC   554

2.5 Zea mays clone 389441 mRNA sequence NA coding protein psRNATarget
EU949034.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||*||||||*||||||||||
targets:532   GUCCGCCCCUGUGAAGAGAGCACC   555

2.5 Zea mays clone 394358 mRNA sequence NA coding protein psRNATarget
BT039435.1
ncRNA:24   UAGGCGCGGACACGUCUCUCGUGG   1
  =|||||||||**||||||||||||
targets:309   GUCCGCGCCUCCGCAGAGAGCACC   332

2.5 Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds NA coding protein psRNATarget