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BaseInfo

ncRNA ID	novel_zma_miR13460
Species	Zea mays
Class	miRNA
Genome position	Chr1:70187497-70187629 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - UAGAGACGUUAGAUCUGAGAUGGA - 24
Stem-loop(if miRNA)	--          A               C   G          UAAG      C    A  UGGUG   CAUUUUAGAU UAACGUCUCUAGUUG UUG UGUAAUUUGC    GACAUC UCUA CG     G   |||||||||| ||||||||||||||| ||| ||||||||||    |||||| |||| ||     G   GUAGAGUCUA AUUGCAGAGAUCAAC AAU ACAUUAAAUG    UUGUAG AGGU GU     G AG          G               U   A          UUUA      A    G  GAUGU
Stem-loop sequence	CAUUUUAGAUAUAACGUCUCUAGUUGCUUGGUGUAAUUUGCUAAGGACAUCCUCUAACGUGGUGGGGUGUAGUGGUGGAAGAUGUUAUUUGUAAAUUACAAUAAUCAACUAGAGACGUUAGAUCUGAGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403224.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:17   CUCAUUUUAGAUCUAACGUCUCUA   40 Target Full Sequence	2.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *=|||=|=|||||||||||||||| targets:343   CUCAUUUUAGAUCUAACGUCUCUA   366 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *==||||=|||||||||||||||| targets:681   CUUAUCUUAGAUCUAACGUCUCUA   704 Target Full Sequence	1.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163658.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *==||=|=|*|||||||||||||| targets:17   CUUAUUUUAAAUCUAACGUCUCUA   40 Target Full Sequence	3.0	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
HI403197.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *==||=|=|*|||||||||||||| targets:17   CUUAUUUUAAAUCUAACGUCUCUA   40 Target Full Sequence	3.0	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235327.1	ncRNA:24   AGGUAGAGUCUAGAUUGCAGAGAU   1   *==||=|=|*|||||||||||||| targets:17   CUUAUUUUAAAUCUAACGUCUCUA   40 Target Full Sequence	3.0	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget