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BaseInfo

ncRNA ID novel_zma_miR13457
Species Zea mays
Class miRNA
Genome position Chr10:122545683-122545764 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 59 - AAUCGAUUUUCACUGGCGGUCCUU - 82
Stem-loop(if miRNA) --C                          GA C    UUCU
   GACCGCUAGUGGAAAUCGAUUUCCAC  G GGUU    U
   ||||||||||||||||||||||||||  | ||||
   CUGGCGGUCACUUUUAGCUAAAGGUG  C CCAA    A
UUC                          AC A    CUCA
Stem-loop sequence CGACCGCUAGUGGAAAUCGAUUUCCACGAGCGGUUUUCUUAACUCAACCACCAGUGGAAAUCGAUUUUCACUGGCGGUCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU960305.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  =|||||||||||||||||||*|||
targets:617   GAGGACCGCCAGUGAAAAUCAAUU   640

1.5 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960305.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  ||--||||||||||||||||||||
targets:663   AA--ACCGCCAGUGAAAAUCGAUU   684

0.0 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150001.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  =|||||||||||||||||||*|||
targets:617   GAGGACCGCCAGUGAAAAUCAAUU   640

1.5 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget
NM_001150001.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  ||--||||||||||||||||||||
targets:663   AA--ACCGCCAGUGAAAAUCGAUU   684

0.0 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget
EU944461.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  |||-||||||||||||||||||||
targets:859   AAG-ACCGCCAGUGAAAAUCGAUU   881

0.0 Zea mays clone 219441 mRNA sequence NA coding protein psRNATarget
EU944461.1
ncRNA:24   UUCCUGGCGGUCACUUUUAGCUAA   1
  ||--|||||||||||||||||*||
targets:904   AA--ACCGCCAGUGAAAAUCGUUU   925

1.5 Zea mays clone 219441 mRNA sequence NA coding protein psRNATarget
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