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BaseInfo

ncRNA ID novel_zma_miR13450
Species Zea mays
Class miRNA
Genome position Chr1:257527400-257527456 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 34 - CCGGUGGGGCACCGGACUGUUCGG - 57
Stem-loop(if miRNA) --   G    -         U      CG
  CCG UGGG GCACCGGAC GUUCGG  G
  ||| |||| ||||||||| ||||||  G
  GGC ACCC CGUGGCCUG CAGGCC  G
CA   -    A         U      AC
Stem-loop sequence CCGGUGGGGCACCGGACUGUUCGGCGGGGCACCGGACUGUCCGGUGCACCCACGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410002.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=|||||||||||||
targets:75   CCGGACAGUCUGGUGCCCCACCGG   98

1.0 Sequence 8127 from Patent EP2074227 NA coding protein psRNATarget
LQ242132.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=|||||||||||||
targets:75   CCGGACAGUCUGGUGCCCCACCGG   98

1.0 Sequence 8127 from Patent EP2985353 NA coding protein psRNATarget
JB170463.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=|||||||||||||
targets:75   CCGGACAGUCUGGUGCCCCACCGG   98

1.0 Sequence 8127 from Patent EP2559767 NA coding protein psRNATarget
EZ065990.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:8   CCGGACAGUCCGGUGCGCCACCGG   31

1.5 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
BT065201.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:594   CCGGACAGUCCGGUGCACCACCGG   617

1.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:597   CCGGACAGUCCGGUGCGCCACCGG   620

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:597   CCGGACAGUCCGGUGCGCCACCGG   620

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:697   CCGGACAGUCCGGUGCACCACCGG   720

1.5 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
BT068871.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:697   CCGGACAGUCCGGUGCACCACCGG   720

1.5 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*|||||||
targets:146   CCGGACAGUCCGGUGCACCACCGG   169

1.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
HI409932.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=||||*||||||||
targets:19   CCGGACAGUCUGGUGGCCCACCGG   42

2.5 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=||||*||||||||
targets:19   CCGGACAGUCUGGUGGCCCACCGG   42

2.5 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
JB170393.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=||||*||||||||
targets:19   CCGGACAGUCUGGUGGCCCACCGG   42

2.5 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
JB169550.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |=|=||||||||||||*|||||||
targets:75   CUGGACAGUCCGGUGCGCCACCGG   98

1.5 Sequence 7214 from Patent EP2559767 NA coding protein psRNATarget
LQ241219.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |=|=||||||||||||*|||||||
targets:75   CUGGACAGUCCGGUGCGCCACCGG   98

1.5 Sequence 7214 from Patent EP2985353 NA coding protein psRNATarget
HI409089.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |=|=||||||||||||*|||||||
targets:75   CUGGACAGUCCGGUGCGCCACCGG   98

1.5 Sequence 7214 from Patent EP2074227 NA coding protein psRNATarget
BT069074.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=|||||=||||||*|||||||
targets:424   CCGGACAGUUCGGUGCGCCACCGG   447

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||=|||||*|||||||
targets:415   CCGGACAGUCUGGUGCACCACCGG   438

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
LQ242243.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*||||||*
targets:157   CCGGACAGUCCGGUGCACCACCGA   180

2.5 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
JB170574.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*||||||*
targets:157   CCGGACAGUCCGGUGCACCACCGA   180

2.5 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
HI410113.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  |||=||||||||||||*||||||*
targets:157   CCGGACAGUCCGGUGCACCACCGA   180

2.5 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
JB170328.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  =||=|||||=||||||*|||||||
targets:65   UCGGACAGUUCGGUGCACCACCGG   88

2.5 Sequence 7992 from Patent EP2559767 NA coding protein psRNATarget
HI409867.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  =||=|||||=||||||*|||||||
targets:65   UCGGACAGUUCGGUGCACCACCGG   88

2.5 Sequence 7992 from Patent EP2074227 NA coding protein psRNATarget
LQ241997.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  =||=|||||=||||||*|||||||
targets:65   UCGGACAGUUCGGUGCACCACCGG   88

2.5 Sequence 7992 from Patent EP2985353 NA coding protein psRNATarget
HI410005.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  ||*=||||||||||||*|||||||
targets:13   CCAGACAGUCCGGUGCGCCACCGG   36

1.5 Sequence 8130 from Patent EP2074227 NA coding protein psRNATarget
JB170466.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  ||*=||||||||||||*|||||||
targets:13   CCAGACAGUCCGGUGCGCCACCGG   36

1.5 Sequence 8130 from Patent EP2559767 NA coding protein psRNATarget
LQ242135.1
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  ||*=||||||||||||*|||||||
targets:13   CCAGACAGUCCGGUGCGCCACCGG   36

1.5 Sequence 8130 from Patent EP2985353 NA coding protein psRNATarget
BT066461.2
ncRNA:24   GGCUUGUCAGGCCACGGGGUGGCC   1
  ||*=||||||||||||*|||||||
targets:493   CCAGACAGUCCGGUGCGCCACCGG   516

1.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
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