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BaseInfo

ncRNA ID	novel_zma_miR13449
Species	Zea mays
Class	miRNA
Genome position	Chr1:273612257-273612338 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	59 - GGAGGGGAUUAGAGAGGCUAAAAU - 82
Stem-loop(if miRNA)	--          A   A                 C     A   GGAGGGGAUU GAG GGCUAAAAUCUCCUCCU AUUCA A   |||||||||| ||| ||||||||||||||||| |||||   CUUCUCCUAA CUC CUGAUUUUAGGGGAGGA UAAGU A AA          C   C                 A     U
Stem-loop sequence	GGAGGGGAUUAGAGAGGCUAAAAUCUCCUCCUCAUUCAAAAUUGAAUAAGGAGGGGAUUUUAGUCCCUCCAAUCCUCUUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647761.2	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||=|||||||||||=|||| targets:934   AUUUUAGUCUCUCUAAUCCUCUCC   957 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||=|||||||||||=|||| targets:934   AUUUUAGUCUCUCUAAUCCUCUCC   957 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||||*|||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	1.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||||*|||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	1.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||||*|||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	1.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   ||||*||||||||*|||||||||| targets:163   AUUUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	1.5	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||||*|||*|||||||||| targets:3496   AUUUUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   |||||||||*|||*|||||||||| targets:3531   AUUUUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   ||||*|*|||||||||||||||=| targets:4792   AUUUAAACCUCUCUAAUCCCCUUC   4815 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UAAAAUCGGAGAGAUUAGGGGAGG   1   ||||*|*|||||||||||||||=| targets:5019   AUUUAAACCUCUCUAAUCCCCUUC   5042 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget