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BaseInfo

ncRNA ID novel_zma_miR13445
Species Zea mays
Class miRNA
Genome position Chr1:297400643-297400728 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AAUGGAGUGGAUUGAGGGGGCUAG - 24
Stem-loop(if miRNA) --       U               G    C C     C   A
  AAUGGAG GGAUUGAGGGGGCUA AAUC C UACUA UUA U
  ||||||| ||||||||||||||| |||| | ||||| |||
  UUACCUC CCUAACUCCCCCGAU UUAG G GUGAU AGU U
CA       C               A    A A     A   U
Stem-loop sequence AAUGGAGUGGAUUGAGGGGGCUAGAAUCCCCUACUACUUAAUUUUGAAUAGUGAGAGAUUAUAGCCCCCUCAAUCCCCUCCAUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238199.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:85   CUAGCCCCUUCAAUCCUCUCCAUU   108

2.5 Sequence 4194 from Patent EP2985353 NA coding protein psRNATarget
JB166530.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:85   CUAGCCCCUUCAAUCCUCUCCAUU   108

2.5 Sequence 4194 from Patent EP2559767 NA coding protein psRNATarget
HI406069.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:85   CUAGCCCCUUCAAUCCUCUCCAUU   108

2.5 Sequence 4194 from Patent EP2074227 NA coding protein psRNATarget
BT036654.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:1038   CUAGCCCCUUCAAUCCUCUCCAUU   1061

2.5 Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds NA coding protein psRNATarget
NM_001349849.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:871   CUAGCCCCUUCAAUCCUCUCCAUU   894

2.5 Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA NA coding protein psRNATarget
EU952717.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  ||||||||=|||||||*|||||||
targets:871   CUAGCCCCUUCAAUCCUCUCCAUU   894

2.5 Zea mays clone 1287070 zinc finger protein mRNA, complete cds NA coding protein psRNATarget
XM_008654031.2
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |||||=||||||||||*|||||||
targets:1671   CUAGCUCCCUCAAUCCCCUCCAUU   1694

2.5 PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA NA coding protein psRNATarget
AY108800.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |*|||||=||||||||*|||||||
targets:779   CCAGCCCUCUCAAUCCCCUCCAUU   802

2.5 Zea mays PCO127746 mRNA sequence NA coding protein psRNATarget
XM_008645760.2
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |*|||||=||||||||*|||||||
targets:1466   CCAGCCCUCUCAAUCCCCUCCAUU   1489

2.5 PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA NA coding protein psRNATarget
EZ055935.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  =||-|*||||||||||||||||||
targets:16   UUA-CACCCUCAAUCCACUCCAUU   38

1.0 TSA: Zea mays contig57057, mRNA sequence NA coding protein psRNATarget
EZ077410.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |***|||||||||||||||=|||*
targets:59   CAUUCCCCCUCAAUCCACUUCAUA   82

2.5 TSA: Zea mays contig13047, mRNA sequence NA coding protein psRNATarget
EU954524.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |***|||||||||||||||=|||*
targets:59   CAUUCCCCCUCAAUCCACUUCAUA   82

2.5 Zea mays clone 1469353 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149312.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |***|||||||||||||||=|||*
targets:59   CAUUCCCCCUCAAUCCACUUCAUA   82

2.5 Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA NA coding protein psRNATarget
XM_008681548.2
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  |***|||||||||||||||=|||*
targets:67   CAUUCCCCCUCAAUCCACUUCAUA   90

2.5 PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:24   GAUCGGGGGAGUUAGGUGAGGUAA   1
  **|*||||=|||||||||||||*|
targets:3908   AAAUCCCCUUCAAUCCACUCCAAU   3931

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
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