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BaseInfo

ncRNA ID	novel_zma_miR13442
Species	Zea mays
Class	miRNA
Genome position	Chr1:234434101-234434175 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	23
Mature sequence(if miRNA)	1 - UUGGAGGGAUUGGAGAGUGUAUA - 23
Stem-loop(if miRNA)	--      -       AGA      AAAUUCCUAAUAAA   UUGGAG GGAUUGG   GUGUAU              U   |||||| |||||||   ||||||   AACUUU CCUAACU   UACAUA              C CU      A       --A      ACACUAUCAAAAAA
Stem-loop sequence	UUGGAGGGAUUGGAGAGUGUAUAAAUUCCUAAUAAAUCAAAAAACUAUCACAAUACAUAUCAAUCCAUUUCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540884.1	ncRNA:23   AUAUGUGAGAGGUUAGGGAGGUU   1   |||||||||||=||||||||||| targets:3921   UAUACACUCUCUAAUCCCUCCAA   3943 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
EZ074421.1	ncRNA:23   AUAUGUGAGAGGUUAGGGAGGUU   1   |||||||||||||||||||*||| targets:26   UAUACACUCUCCAAUCCCUACAA   48 Target Full Sequence	1.5	TSA: Zea mays contig10058, mRNA sequence	NA	coding protein	psRNATarget
BT039083.1	ncRNA:23   AUAUGUGAGAGGUUAGGGAGGUU   1   |||||*||||||||||||||||| targets:1278   UAUACCCUCUCCAAUCCCUCCAA   1300 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551172.1	ncRNA:23   AUAUGUGAGAGGUUAGGGAGGUU   1   |||||*||||||||||||||||| targets:1317   UAUACCCUCUCCAAUCCCUCCAA   1339 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666548.1	ncRNA:23   AUAUGUGAGAGGUUAGGGAGGUU   1   ||||=|||||||*|||||||||| targets:225   UAUAUACUCUCCCAUCCCUCCAA   247 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA	NA	coding protein	psRNATarget
EU946584.1	ncRNA:23   AUAUGU--GAGAGGUUAGGGAGGUU   1   |*||||--||||||||||||||||| targets:517   UUUACAUCCUCUCCAAUCCCUCCAA   541 Target Full Sequence	2.5	Zea mays clone 317794 mRNA sequence	NA	coding protein	psRNATarget