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BaseInfo

ncRNA ID	novel_zma_miR13436
Species	Zea mays
Class	miRNA
Genome position	Chr3:82864482-82864556 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	23
Mature sequence(if miRNA)	53 - UUGGAUUUAGAUCUGACGGGUAA - 75
Stem-loop(if miRNA)	--       -U       AC    AAUU   UG ---        UUGGAUU  AGAUCUG  GGGU    UCG  U   ACCGCU   |||||||  |||||||  ||||    |||  |   |||||U   AACCUAA  UCUAGAU  CCCA    AGC  A   UGGUGC GC       UC       --    ----   CU AUU
Stem-loop sequence	UUGGAUUUAGAUCUGACGGGUAAUUUCGUGUACCGCUUCGUGGUUUAAUCCGAACCCUAGAUCUCUAAUCCAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544922.1	ncRNA:23   AAUGGGCAGUCUAGAUUUAGGUU   1   ||*||=||=|||||||||||||| targets:3409   UUUCCUGUUAGAUCUAAAUCCAA   3431 Target Full Sequence	2.0	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544923.1	ncRNA:23   AAUGGGCAGUCUAGAUUUAGGUU   1   ||*||=||=|||||||||||||| targets:3384   UUUCCUGUUAGAUCUAAAUCCAA   3406 Target Full Sequence	2.0	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663308.2	ncRNA:23   AAUGGGCAGUCUAGAUUUAGGUU   1   ||*||=||=|||||||||||||| targets:3029   UUUCCUGUUAGAUCUAAAUCCAA   3051 Target Full Sequence	2.0	PREDICTED: Zea mays Nuclear pore complex protein NUP88 (si486016f12b), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956751.1	ncRNA:23   AA-UGGGCAGUCUAGAUUUAGGUU   1   ||-|=||||=|||||||=|||||| targets:861   UUGAUCCGUUAGAUCUAGAUCCAA   884 Target Full Sequence	2.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:23   AA-UGGGCAGUCUAGAUUUAGGUU   1   ||-|=||||=|||||||=|||||| targets:679   UUGAUCCGUUAGAUCUAGAUCCAA   702 Target Full Sequence	2.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ242227.1	ncRNA:23   AA-UGGGCAGUCUAGAUUUAGGUU   1   ||-|=||||=|||||||=|||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	2.5	Sequence 8222 from Patent EP2985353	NA	coding protein	psRNATarget
JB170558.1	ncRNA:23   AA-UGGGCAGUCUAGAUUUAGGUU   1   ||-|=||||=|||||||=|||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	2.5	Sequence 8222 from Patent EP2559767	NA	coding protein	psRNATarget
HI410097.1	ncRNA:23   AA-UGGGCAGUCUAGAUUUAGGUU   1   ||-|=||||=|||||||=|||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	2.5	Sequence 8222 from Patent EP2074227	NA	coding protein	psRNATarget