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BaseInfo

ncRNA ID	novel_zma_miR13434
Species	Zea mays
Class	miRNA
Genome position	Chr1:176355003-176355156 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	131 - AGACGUUAGAUCUAAGAUGGAUGA - 154
Stem-loop(if miRNA)	--        A             A        C             --A      CC    -----       -A  AGG   AUCUAUCU AGAUCUAACGUCU UGAUUGCU UGUAUAUUUUGCA   AAUGCC  UCCA     GCCUCCA  GC   G   |||||||| ||||||||||||| |||||||| |||||||||||||   ||||||  ||||     |||||||  ||   U   UAGGUAGA UCUAGAUUGCAGA ACUAACGA ACAUAUAAAACGU   UUGUGG  AGGU     UGGAGGU  UG   A AG        A             A        U             GUA      -A    GACAA       AG  AAC
Stem-loop sequence	AUCUAUCUAAGAUCUAACGUCUAUGAUUGCUCUGUAUAUUUUGCAAAAUGCCCCUCCAGCCUCCAAGCAGGGUACAAGUGAUGGAGGUAACAGUGGAAGGUGUUAUGUGCAAAAUAUACAUAGCAAUCAAAGACGUUAGAUCUAAGAUGGAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT016456.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   |||*||*||||||||||||||||| targets:43   UCACCCUUCUUAGAUCUAACGUCU   66 Target Full Sequence	1.0	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   *||*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   *||*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   *||*=|||=||||||||||||||| targets:14   CCACUCAUUUUAGAUCUAACGUCU   37 Target Full Sequence	1.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654898.2	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   |||*=|||=|||||||||||*||| targets:3   UCACUCAUUUUAGAUCUAACAUCU   26 Target Full Sequence	2.5	PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA	NA	coding protein	psRNATarget
EZ113957.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   ||*|||||||*|||||||||*||| targets:229   UCUUCCAUCUCAGAUCUAACUUCU   252 Target Full Sequence	2.5	TSA: Zea mays contig49618, mRNA sequence	NA	coding protein	psRNATarget
EU955849.1	ncRNA:24   AGUAGGUAGAAUCUAGAUUGCAGA   1   *||-|||||||*|||||||||||* targets:1976   CCA-CCAUCUUUGAUCUAACGUCA   1998 Target Full Sequence	2.5	Zea mays clone 1548842 mRNA sequence	NA	coding protein	psRNATarget