Search result

BaseInfo

ncRNA ID	novel_zma_miR13431
Species	Zea mays
Class	miRNA
Genome position	Chr9:6655843-6655944 [-]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	79 - AGUUGUGAGACAAUAUGUGUAGAA - 102
Stem-loop(if miRNA)	--            A           A               CA      CA   AGUUGUGAGACA UAUGUGUAGAA CCUAGGAGAACUACA  UGAAAU  U   |||||||||||| ||||||||||| |||||||||||||||  ||||||   UCAACACUCUGU AUACACAUUUU GGAUUCUCUUGAUGU  ACUUUG  A CU            C           -               -A      AU
Stem-loop sequence	AGUUGUGAGACAAUAUGUGUAGAAACCUAGGAGAACUACACAUGAAAUCAUAUAGUUUCAAUGUAGUUCUCUUAGGUUUUACACAUACUGUCUCACAACUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235350.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:148   UUCUACACAUAGUGUCUCACAACU   171 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163657.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1321 from Patent EP2559767	NA	coding protein	psRNATarget
HI403226.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1351 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235356.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1351 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235382.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1377 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235326.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1321 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
HI403196.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1321 from Patent EP2074227	NA	coding protein	psRNATarget
JB163687.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1351 from Patent EP2559767	NA	coding protein	psRNATarget
HI402968.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
JB163698.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1362 from Patent EP2559767	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAGUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
HI403203.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235367.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1362 from Patent EP2985353	NA	coding protein	psRNATarget
HI403237.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1362 from Patent EP2074227	NA	coding protein	psRNATarget
JB163664.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1328 from Patent EP2559767	NA	coding protein	psRNATarget
JB163713.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1377 from Patent EP2559767	NA	coding protein	psRNATarget
HI403252.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1377 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235333.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:80   UUCUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1328 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235332.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:78   UUCUACACAUAAUGUCUCACAACU   101 Target Full Sequence	1.5	Sequence 1327 from Patent EP2985353	NA	coding protein	psRNATarget
HI403202.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:78   UUCUACACAUAAUGUCUCACAACU   101 Target Full Sequence	1.5	Sequence 1327 from Patent EP2074227	NA	coding protein	psRNATarget
JB163663.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||||||*|||||||||||| targets:78   UUCUACACAUAAUGUCUCACAACU   101 Target Full Sequence	1.5	Sequence 1327 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235373.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||=||||||||*|||||||||||| targets:80   UUUUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1368 from Patent EP2985353	NA	coding protein	psRNATarget
HI403243.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||=||||||||*|||||||||||| targets:80   UUUUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1368 from Patent EP2074227	NA	coding protein	psRNATarget
HI403200.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||=|||*|||||||||||| targets:80   UUCUACAUAUAAUGUCUCACAACU   103 Target Full Sequence	2.5	Sequence 1325 from Patent EP2074227	NA	coding protein	psRNATarget
JB163661.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||=|||*|||||||||||| targets:80   UUCUACAUAUAAUGUCUCACAACU   103 Target Full Sequence	2.5	Sequence 1325 from Patent EP2559767	NA	coding protein	psRNATarget
JB163704.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||=||||||||*|||||||||||| targets:80   UUUUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1368 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235330.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   |||||||=|||*|||||||||||| targets:80   UUCUACAUAUAAUGUCUCACAACU   103 Target Full Sequence	2.5	Sequence 1325 from Patent EP2985353	NA	coding protein	psRNATarget
HI403232.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||*||||||||*|||||||||||| targets:80   UUGUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1357 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235362.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||*||||||||*|||||||||||| targets:80   UUGUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1357 from Patent EP2985353	NA	coding protein	psRNATarget
JB163693.1	ncRNA:24   AAGAUGUGUAUAACAGAGUGUUGA   1   ||*||||||||*|||||||||||| targets:80   UUGUACACAUAAUGUCUCACAACU   103 Target Full Sequence	1.5	Sequence 1357 from Patent EP2559767	NA	coding protein	psRNATarget