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BaseInfo

ncRNA ID novel_zma_miR13417
Species Zea mays
Class miRNA
Genome position Chr9:144679561-144679623 [-]
Reference genome RefGen_v4
Source SRR5451005;SRR2089702;SRR2089703
Length 23
Mature sequence(if miRNA) 1 - AAGAGAUUAUAGGAGUGCGGGUU - 23
Stem-loop(if miRNA) ---  U     UUUA     A    - -A     
   CC UACUU    UAUAA CUCU C  UAUUAU
   || |||||    ||||| |||| |  |||||A
   GG GUGAG    AUAUU GAGA G  AUGAUG
UUG  C     ---G     A    A AC     
Stem-loop sequence CCUUACUUUUUAUAUAAACUCUCAUAUUAUAGUAGUACAGAAGAGAUUAUAGGAGUGCGGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
S78780.1
ncRNA:23   UUGGGCGUGAGGAUAUUAGAGAA   1
  |||||||||||=|||||||||||
targets:65   AACCCGCACUCUUAUAAUCUCUU   87

1.5 (gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt] NA coding protein psRNATarget