Search result

BaseInfo

ncRNA ID novel_zma_miR13412
Species Zea mays
Class miRNA
Genome position Chr8:46418857-46418938 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 59 - GGCUUGUUGUAGUAGAAUACGGAG - 82
Stem-loop(if miRNA) --       G  U  C    U     CU   A  U     CG
  CUGUGUU CU CU CGAC GGCUA  GCC CG CUUGC  U
  ||||||| || || |||| |||||  ||| || |||||  G
  GGCAUAA GA GA GUUG UCGGU  UGG GU GGACG  U
GA       -  U  U    U     AG   -  -     CC
Stem-loop sequence CUGUGUUGCUUCUCCGACUGGCUACUGCCACGUCUUGCCGUGUCCGCAGGUGGGUGAUGGCUUGUUGUAGUAGAAUACGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085312.1
ncRNA:24   GAGGCAUAAGAUGAUGUUGUUCGG   1
  =|==||*||||||||||||||*||
targets:273   UUUUGUUUUCUACUACAACAAUCC   296

2.5 Zea mays full-length cDNA clone ZM_BFb0371H23 mRNA, complete cds NA coding protein psRNATarget
NM_001196157.1
ncRNA:24   GAGGCAUAAGAUGAUGUUGUUCGG   1
  =|==||*||||||||||||||*||
targets:273   UUUUGUUUUCUACUACAACAAUCC   296

2.5 Zea mays uncharacterized LOC100501445 (LOC100501445), mRNA NA coding protein psRNATarget