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BaseInfo

ncRNA ID novel_zma_miR13408
Species Zea mays
Class miRNA
Genome position Chr8:65151477-65151566 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AACGGUACAGAUCGGGACGAGAUU - 24
Stem-loop(if miRNA) --    -     UU     C        -      --  UA  AUAC
  UCUC UUCCG  UCUGU CCGUUUUC AUAUUU  UU  AU    A
  |||| |||||  ||||| |||||||| ||||||  ||  ||    A
  AGAG AGGGC  AGACA GGCAAAAG UAUAAA  AA  UG    A
UU    C     -U     U        A      CU  GC  GCAA
Stem-loop sequence UCUCUUCCGUUUCUGUCCCGUUUUCAUAUUUUUUAAUAUACAAAAACGGUCGAAUCAAAUAUAGAAAACGGUACAGAUCGGGACGAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU946195.1
ncRNA:24   UUAGAGCAGGGCUAGACAUGGCAA   1
  *=**||||==|||||||||||||*
targets:177   UGCAUCGUUUCGAUCUGUACCGUA   200

3.0 Zea mays clone 300346 mRNA sequence NA coding protein psRNATarget
BT054774.1
ncRNA:24   UUAGAGCAGGGCUAGACAUGGCAA   1
  *=**||||==|||||||||||||*
targets:175   UGCAUCGUUUCGAUCUGUACCGUA   198

3.0 Zea mays full-length cDNA clone ZM_BFb0038L16 mRNA, complete cds NA coding protein psRNATarget