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BaseInfo

ncRNA ID novel_zma_miR13405
Species Zea mays
Class miRNA
Genome position Chr10:103065696-103065767 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 22
Mature sequence(if miRNA) 1 - AAACACAAGGGCAUAUAGAGAC - 22
Stem-loop(if miRNA) --        G G    U            A     
  AAACACAA G CAUA AGAGACUUCAAC AGUCCU
  |||||||| | |||| |||||||||||| |||||C
  UUUGUGUU C GUGU UCUUUGAAGUUG UCAGGA
AG        G A    -            A     
Stem-loop sequence AAACACAAGGGCAUAUAGAGACUUCAACAAGUCCUCAGGACUAGUUGAAGUUUCUUGUGACGUUGUGUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538479.1
ncRNA:22   CAGAGAUAUACGGGAACACAAA   1
  *|*||||*||||||||*|||||
targets:568   CUAUCUAAAUGCCCUUCUGUUU   589

2.5 PREDICTED: Zea mays TP53-regulating kinase (LOC100502223), transcript variant X1, mRNA NA coding protein psRNATarget
BT087453.1
ncRNA:22   CAGAGAUAUACGGGAACACAAA   1
  *|*||||*||||||||*|||||
targets:988   CUAUCUAAAUGCCCUUCUGUUU   1009

2.5 Zea mays full-length cDNA clone ZM_BFb0082J04 mRNA, complete cds NA coding protein psRNATarget
BT062113.1
ncRNA:22   CAGAGAUAUACGGGAACACAAA   1
  *|*||||*||||||||*|||||
targets:354   CUAUCUAAAUGCCCUUCUGUUU   375

2.5 Zea mays full-length cDNA clone ZM_BFb0215N14 mRNA, complete cds NA coding protein psRNATarget