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BaseInfo

ncRNA ID	novel_zma_miR13398
Species	Zea mays
Class	miRNA
Genome position	Chr8:168303762-168303866 [+]
Reference genome	RefGen_v4
Source	SRR5451005;SRR1997866;SRR2089707
Length	24
Mature sequence(if miRNA)	82 - GAACUGAAAUGGAAUAAAGUGGAG - 105
Stem-loop(if miRNA)	--                    C C      A       UA          C   CCAUUUUAUUCCAUUUUAGU C UAAAUU UUAAAUA  GAAACUAAAA U   |||||||||||||||||||| | |||||| |||||||  |||||||||| A   GGUGAAAUAAGGUAAAGUCA G AUUUAA AAUUUAU  CUUUGAUUUU U GA                    A U      C       UC          A
Stem-loop sequence	CCAUUUUAUUCCAUUUUAGUCCCUAAAUUAUUAAAUAUAGAAACUAAAACUAUAUUUUAGUUUCCUUAUUUAACAAUUUAUGAACUGAAAUGGAAUAAAGUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967664.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||||||||||||||||||=||||| targets:1131   CUCCACUUUAUUCCAUUUUAGUUC   1154 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||||||||||||||||||=||||| targets:1131   CUCCACUUUAUUCCAUUUUAGUUC   1154 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI403336.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1461 from Patent EP2074227	NA	coding protein	psRNATarget
JB163729.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
HI403268.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235466.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1461 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
JB163797.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||| targets:1   UCCACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1461 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||=||=||||||||||||=||||| targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||=||=||||||||||||=||||| targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||=||=||||||||||||=||||| targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||= targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
JB163910.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||= targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   ||=||||||||||||||=||||| targets:1   UCUACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
HI403449.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||||||||||||=||||= targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
JB163859.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   ||=||||||||||||||=||||| targets:1   UCUACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
HI403398.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   ||=||||||||||||||=||||| targets:1   UCUACUUUAUUCCAUUUUAGUUC   23 Target Full Sequence	1.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||*||=||||||||||||=||||| targets:1004   CUACAUUUUAUUCCAUUUUAGUUC   1027 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235468.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||*|||||||||=||||| targets:1   UCCACUUAAUUCCAUUUUAGUUC   23 Target Full Sequence	2.5	Sequence 1463 from Patent EP2985353	NA	coding protein	psRNATarget
JB163799.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||*|||||||||=||||| targets:1   UCCACUUAAUUCCAUUUUAGUUC   23 Target Full Sequence	2.5	Sequence 1463 from Patent EP2559767	NA	coding protein	psRNATarget
HI403338.1	ncRNA:23   AGGUGAAAUAAGGUAAAGUCAAG   1   |||||||*|||||||||=||||| targets:1   UCCACUUAAUUCCAUUUUAGUUC   23 Target Full Sequence	2.5	Sequence 1463 from Patent EP2074227	NA	coding protein	psRNATarget
EU947982.1	ncRNA:24   GAGGUGAAAUAAGGUAAAGUCAAG   1   ||==-=||||||=||||||||||| targets:108   CUUU-UUUUAUUUCAUUUCAGUUC   130 Target Full Sequence	2.5	Zea mays clone 368179 mRNA sequence	NA	coding protein	psRNATarget