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BaseInfo

ncRNA ID	novel_zma_miR13397
Species	Zea mays
Class	miRNA
Genome position	Chr8:166917255-166917452 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	175 - UCAUUUAGAGAACUGUUGGAAAAU - 198
Stem-loop(if miRNA)	--UC                  AU GG  G   U    ---U     -     U  A   AAAAAAUAA UCACAAAAACUAUAUAAUGCAGUCAACAUUUU     UCCAAUAGUUCUCUAAAU  A  UU UAA UUUG    UUUGU AUCUA CC CAU         G                                U     ||||||||||||||||||  |  || ||| ||||    ||||| ||||| || |||         |     AGGUUGUCAAGAGAUUUA  U  AA AUU AAAU    GAACA UAGAU GG GUA         G                                G UAAA                  CU GA  G   U    UGUU     A     U  A   --AAAGAGA AUGUAAACCGUUGGUAAAUUGUUGAGGGAUUU
Stem-loop sequence	UCUCCAAUAGUUCUCUAAAUAUAGGUUGUAAUUUUGUUUUGUAUCUAUCCACAUAAAAAAUAAGUCACAAAAACUAUAUAAUGCAGUCAACAUUUUUGUUUAGGGAGUUGUUAAAUGGUUGCCAAAUGUAGAGAGAAAAUGAGGUUAGAUAACAAGUUGUUAAAUUUAGAAAGUUCAUUUAGAGAACUGUUGGAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |||*|||||||||||||||||||| targets:2772   AUUCUCCAACAGUUCUCUAAAUGA   2795 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |||*|||||||||||||||||||| targets:2736   AUUCUCCAACAGUUCUCUAAAUGA   2759 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |||*|||||||||||||||||||| targets:2526   AUUCUCCAACAGUUCUCUAAAUGA   2549 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |||*|||||||||||||||||||| targets:2482   AUUCUCCAACAGUUCUCUAAAUGA   2505 Target Full Sequence	0.0	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |||*|||||||||||||||||||| targets:1329   AUUCUCCAACAGUUCUCUAAAUGA   1352 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538816.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   ****||||==|||||||||||||| targets:874   CAACUCCAGUAGUUCUCUAAAUGA   897 Target Full Sequence	2.0	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538817.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   ****||||==|||||||||||||| targets:851   CAACUCCAGUAGUUCUCUAAAUGA   874 Target Full Sequence	2.0	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   UAAAAGGUUGUCAAGAGAUUUACU   1   |*|**||||||||||||||||||| targets:48   ACUCACCAACAGUUCUCUAAAUGA   71 Target Full Sequence	0.0	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget
XM_020547050.1	ncRNA:24   UAA-AAGGUUGUCAAGAGAUUUACU   1   =||-|||||||*|||||*||||||| targets:46   GUUCUUCCAACUGUUCUAUAAAUGA   70 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943566 (LOC109943566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547051.1	ncRNA:24   UAA-AAGGUUGUCAAGAGAUUUACU   1   =||-|||||||*|||||*||||||| targets:48   GUUCUUCCAACUGUUCUAUAAAUGA   72 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943566 (LOC109943566), transcript variant X2, mRNA	NA	coding protein	psRNATarget