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BaseInfo

ncRNA ID	novel_zma_miR13393
Species	Zea mays
Class	miRNA
Genome position	Chr8:141612251-141612384 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - AGGGCUGAUUUGGUGGUACGGGAU - 24
Stem-loop(if miRNA)	--      G        G  C                C          A   C      CA   UAA   AGGGCU AUUUGGUG UA GGGAUCCCAAGAGGAU CAUGGGGGAG AAU CCCUUG  AUU   U   |||||| |||||||| || |||||||||||||||| |||||||||| ||| ||||||  |||   UCCCGA UAAACCAC AU CCCUAGGGUUCUCCUA GUACCCCCUC UUA GGGAAC  UAA   U AU      G        G  U                A          C   A      AA   UUU
Stem-loop sequence	AGGGCUGAUUUGGUGGUACGGGAUCCCAAGAGGAUCCAUGGGGGAGAAAUCCCCUUGCAAUUUAAUUUUUAAUAACAAGGGAAUUCCUCCCCCAUGAAUCCUCUUGGGAUCCCUUAGCACCAAAUGAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU950017.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   ||||||*==||||||||||||||| targets:512   AUCCCGGGUCACCAAAUCAGCCCU   535 Target Full Sequence	3.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   ||||||*==||||||||||||||| targets:1877   AUCCCGGGUCACCAAAUCAGCCCU   1900 Target Full Sequence	3.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   ||||||*==||||||||||||||| targets:2315   AUCCCGGGUCACCAAAUCAGCCCU   2338 Target Full Sequence	3.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   |||||**||||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	2.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   |||||**||||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   UAGG-GCAUGGUGGUUUAGUCGGGA   1   ||||-|*|==||||||||||||||| targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   UAGG-GCAUGGUGGUUUAGUCGGGA   1   ||||-|*|==||||||||||||||| targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   UAGG-GCAUGGUGGUUUAGUCGGGA   1   ||||-|*|==||||||||||||||| targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU943476.1	ncRNA:24   UAGGGCAUGGUGGUUUAGUCGGGA   1   |||==|*|**|||||||||||||| targets:990   AUCUUGGAAAACCAAAUCAGCCCU   1013 Target Full Sequence	3.0	Zea mays clone 1625592 mRNA sequence	NA	coding protein	psRNATarget