Search result

BaseInfo

ncRNA ID	novel_zma_miR13390
Species	Zea mays
Class	miRNA
Genome position	Chr3:33198891-33199012 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - UGGGUACUCUAGUAUUGAAGUGGU - 24
Stem-loop(if miRNA)	--           ----------------  AUUGAAGUGGUUUUGAAGGAUCGAAGAGUGUAUAAAUC   UGGGUACUCUA                GU                                      C   |||||||||||                ||   ACCCAUGAGAU                CU                                      C AA           AAUUAUUUUCCCUAAU  CACCUAAGUCUACAUAACACCCUCAAAAACUAGAUAAU
Stem-loop sequence	UGGGUACUCUAGUAUUGAAGUGGUUUUGAAGGAUCGAAGAGUGUAUAAAUCCCUAAUAGAUCAAAAACUCCCACAAUACAUCUGAAUCCACUCUAAUCCCUUUUAUUAAUAGAGUACCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540884.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   |||||||||||||||||||||||| targets:3944   ACCACUUCAAUACUAGAGUACCCA   3967 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
XM_008666548.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   |||||||||*|||||||||||||| targets:248   ACCACUUCAUUACUAGAGUACCCA   271 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA	NA	coding protein	psRNATarget
EZ074421.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   |||||||||||||||*|||||||* targets:49   ACCACUUCAAUACUAAAGUACCCC   72 Target Full Sequence	2.5	TSA: Zea mays contig10058, mRNA sequence	NA	coding protein	psRNATarget
EZ056559.1	ncRNA:24   UGGUG-AAGUUAUGAUCUCAUGGGU   1   |=|=|-||||*|||||||||||||| targets:10   AUCGCAUUCAUUACUAGAGUACCCA   34 Target Full Sequence	3.0	TSA: Zea mays contig57681, mRNA sequence	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:24   UGG-UGAAGUUAUGAUCUCAUGGGU   1   |==-|*|*|||||||||||||=||| targets:102   AUUGAGUCCAAUACUAGAGUAUCCA   126 Target Full Sequence	2.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   UGG-UGAAGUUAUGAUCUCAUGGGU   1   |==-|*|*|||||||||||||=||| targets:102   AUUGAGUCCAAUACUAGAGUAUCCA   126 Target Full Sequence	2.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   UGG-UGAAGUUAUGAUCUCAUGGGU   1   |==-|*|*|||||||||||||=||| targets:102   AUUGAGUCCAAUACUAGAGUAUCCA   126 Target Full Sequence	2.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
BT069728.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   *=*|*||*||||=||||||||||| targets:384   UUGAGUUAAAUAUUAGAGUACCCA   407 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0212B11 mRNA, complete cds	NA	coding protein	psRNATarget
EU328276.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   *=*|*||*||||=||||||||||| targets:969   UUGAGUUAAAUAUUAGAGUACCCA   992 Target Full Sequence	2.5	Zea mays RFLP probe p-csu389 mRNA sequence	NA	coding protein	psRNATarget
AY107149.2	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   *=*|*||*||||=||||||||||| targets:1327   UUGAGUUAAAUAUUAGAGUACCCA   1350 Target Full Sequence	2.5	Zea mays PCO139446 mRNA sequence	NA	coding protein	psRNATarget
BT062480.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   *=*|*||*||||=||||||||||| targets:1499   UUGAGUUAAAUAUUAGAGUACCCA   1522 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0303E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174655.1	ncRNA:24   UGGUGAAGUUAUGAUCUCAUGGGU   1   *=*|*||*||||=||||||||||| targets:1499   UUGAGUUAAAUAUUAGAGUACCCA   1522 Target Full Sequence	2.5	Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), mRNA	NA	coding protein	psRNATarget