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BaseInfo

ncRNA ID	novel_zma_miR13387
Species	Zea mays
Class	miRNA
Genome position	Chr7:33215342-33215405 [+]
Reference genome	RefGen_v4
Source	SRR5451005;SRR2089702
Length	24
Mature sequence(if miRNA)	1 - GAGGAUUGGAGGGGAUAGAGGGGG - 24
Stem-loop(if miRNA)	--GA              A          CUA     GGAUUGGAGGGGAU GAGGGGGAAA   G     |||||||||||||| ||||||||||     CCUAACCUCCCCUA CUCCCCCUUU   U CCCC              A          ACU
Stem-loop sequence	GAGGAUUGGAGGGGAUAGAGGGGGAAACUAGUUCAUUUCCCCCUCAAUCCCCUCCAAUCCCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163954.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |||||||*|||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |||||||*|||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |||||||*|||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |||||||*|||||||||=|||||| targets:2151   CCCCCUCAAUCCCCUCCGAUCCUC   2174 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |=|=|||*|||||||||||||||| targets:1464   CUCUCUCAAUCCCCUCCAAUCCUC   1487 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553205.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   ||=||*||=||||||||||||||| targets:50   CCUCCCCUGUCCCCUCCAAUCCUC   73 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100275420 (LOC100275420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   =|=||||*|||||||||||||||= targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54 Target Full Sequence	2.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   =|=||||*|||||||||||||||= targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54 Target Full Sequence	2.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   =|=||||*|||||||||||||||= targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54 Target Full Sequence	2.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   ||==|||*|||||||||=|||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	2.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   ||==|||*|||||||||=|||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	2.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   ||==|||*|||||||||=|||||| targets:55   CCUUCUCAAUCCCCUCCGAUCCUC   78 Target Full Sequence	2.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   ==||||=*|||||||||||||||| targets:78   UUCCCUUAAUCCCCUCCAAUCCUC   101 Target Full Sequence	2.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   =|*||||*|||||||||||||||| targets:76   UCACCUCAAUCCCCUCCAAUCCUC   99 Target Full Sequence	1.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   =|*||||*|||||||||||||||| targets:42   UCACCUCAAUCCCCUCCAAUCCUC   65 Target Full Sequence	1.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008668381.2	ncRNA:24   GGGG-GAGAUAGGGGAGGUUAGGAG   1   |=|=-||||*|||||||||=||||| targets:115   CUCUGCUCUUUCCCCUCCAGUCCUC   139 Target Full Sequence	2.5	PREDICTED: Zea mays Squamosa promoter-binding-like protein 1 (LOC100272505), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |=|*|||*||||||||||||||*| targets:71   CUCACUCAAUCCCCUCCAAUCCCC   94 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |=|*|||*||||||||||||||*| targets:71   CUCACUCAAUCCCCUCCAAUCCCC   94 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   GGGGGAGAUAGGGGAGGUUAGGAG   1   |=|*|||*||||||||||||||*| targets:71   CUCACUCAAUCCCCUCCAAUCCCC   94 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget