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BaseInfo

ncRNA ID novel_zma_miR13379
Species Zea mays
Class miRNA
Genome position Chr6:44947056-44947107 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AUAAUUCAUCGGACUGUCCGGUAU - 24
Stem-loop(if miRNA) --AUA           U       AU
     AUUCAUCGGAC GUCCGGU  U
     ||||||||||| |||||||
     UGAGUGGCCUG CAGGCCA  G
GCGAC           U       CC
Stem-loop sequence AUAAUUCAUCGGACUGUCCGGUAUUGCCACCGGACUGUCCGGUGAGUCAGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409410.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:17   ACACCGGACAGUCCGGUGAAUUAU   40

1.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
JB169871.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:17   ACACCGGACAGUCCGGUGAAUUAU   40

1.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:17   ACACCGGACAGUCCGGUGAAUUAU   40

1.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
BT083610.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:702   ACACCGGACAGUCCGGUGAAUUAU   725

1.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:567   ACACCGGACAGUCCGGUGAAUUAU   590

1.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  |*|||||||||||||=||||||||
targets:567   ACACCGGACAGUCCGGUGAAUUAU   590

1.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
JB170098.1
ncRNA:23   AUGGCCUGUCAGGCUACUUAAUA   1
  *|||||||||||||=||||||||
targets:1   CACCGGACAGUCCGGUGAAUUAU   23

1.5 Sequence 7762 from Patent EP2559767 NA coding protein psRNATarget
HI409637.1
ncRNA:23   AUGGCCUGUCAGGCUACUUAAUA   1
  *|||||||||||||=||||||||
targets:1   CACCGGACAGUCCGGUGAAUUAU   23

1.5 Sequence 7762 from Patent EP2074227 NA coding protein psRNATarget
LQ241767.1
ncRNA:23   AUGGCCUGUCAGGCUACUUAAUA   1
  *|||||||||||||=||||||||
targets:1   CACCGGACAGUCCGGUGAAUUAU   23

1.5 Sequence 7762 from Patent EP2985353 NA coding protein psRNATarget
U41079.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|||||||||||||=||||||||
targets:31   UCACCGGACAGUCCGGUGAAUUAU   54

1.5 Zea mays copia-type retroelement PREM-2, partial sequence NA coding protein psRNATarget
BT069074.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|||||||||||||=||||||||
targets:687   UCACCGGACAGUCCGGUGAAUUAU   710

1.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  =*|||||||||||||=||||||||
targets:828   GCACCGGACAGUCCGGUGAAUUAU   851

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  =*|||||||||||||=||||||||
targets:828   GCACCGGACAGUCCGGUGAAUUAU   851

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|=|||||||||||=||||||||
targets:627   UCAUCGGACAGUCCGGUGAAUUAU   650

1.5 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|=|||||||||||=||||||||
targets:704   UCAUCGGACAGUCCGGUGAAUUAU   727

1.5 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|=|||||||||||=||||||||
targets:627   UCAUCGGACAGUCCGGUGAAUUAU   650

1.5 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|=|||||||||||=||||||||
targets:704   UCAUCGGACAGUCCGGUGAAUUAU   727

1.5 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
XM_020548683.1
ncRNA:24   UAUGGCCUGU-CAGGCUACUUAAUA   1
  **||||||||-||||||||||||||
targets:163   UCACCGGACAUGUCCGAUGAAUUAU   187

2.0 PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X2, mRNA NA coding protein psRNATarget
BT066461.2
ncRNA:24   UAUGGCCUGUCAGGCUACUUAAUA   1
  **|||*|||||||||=||||||||
targets:732   CCACCAGACAGUCCGGUGAAUUAU   755

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
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