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BaseInfo

ncRNA ID	novel_zma_miR13377
Species	Zea mays
Class	miRNA
Genome position	Chr6:435205-435333 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - CCAGACUGUCCGGUGCACACCGAA - 24
Stem-loop(if miRNA)	--               CACA   -AACAA  AA        G  -UC  UUUCUUACUUGGCAAA   CCAGACUGUCCGGUG    CCG      UG  UAGUGUGU AU   CC                G   |||||||||||||||    |||      ||  |||||||| ||   ||                C   GGUCUGACAGGCCAC    GGC      AC  AUCACACG UA   CG                C GC               --AC   AACCUG  AG        G  CCC  GUUACAAAAUUACUAG
Stem-loop sequence	CCAGACUGUCCGGUGCACACCGAACAAUGAAUAGUGUGUGAUUCCCUUUCUUACUUGGCAAAGCCGAUCAUUAAAACAUUGGCCCCAUGGCACACUAGACAGUCCAACGGCACACCGGACAGUCUGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170340.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||||||||*||||||||| targets:78   UCCGGUGUGCACCGAACAGUCUGG   101 Target Full Sequence	1.5	Sequence 8004 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242009.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||||||||*||||||||| targets:78   UCCGGUGUGCACCGAACAGUCUGG   101 Target Full Sequence	1.5	Sequence 8004 from Patent EP2985353	NA	coding protein	psRNATarget
HI409879.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||||||||*||||||||| targets:78   UCCGGUGUGCACCGAACAGUCUGG   101 Target Full Sequence	1.5	Sequence 8004 from Patent EP2074227	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*|||||||||||||||||||*|| targets:180   UCCGGUGUGCACCGGACAGUCCGG   203 Target Full Sequence	1.5	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AAGC-CAC-ACGUGGCCUGUCAGACC   1   *|||-|||-||||||||||||||||| targets:402   GUCGAGUGGUGCACCGGACAGUCUGG   427 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   **|***|||||||||||||||*|| targets:827   AGCCUGGUGCACCGGACAGUCCGG   850 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU950065.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*|*||||*|||||||||||=||| targets:715   UCCAGUGUACACCGGACAGUUUGG   738 Target Full Sequence	2.5	Zea mays clone 459738 mRNA sequence	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:28   UCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.5	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:28   UCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.5	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:28   UCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.5	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:115   UCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	2.5	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
HI409108.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:115   UCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	2.5	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
JB169569.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*||||||*||||||||||||*|| targets:115   UCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	2.5	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   AAGCCACACGUGGCCUGUCAGACC   1   |*|||||**||||||||||||||| targets:2767   UCCGGUGCACACCGGACAGUCUGG   2790 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget