Search result

BaseInfo

ncRNA ID novel_zma_miR13375
Species Zea mays
Class miRNA
Genome position Chr6:33457924-33458000 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AAUGUGGUUUGUUGAAUGUCGGUA - 24
Stem-loop(if miRNA) --    A      -     G UG     U  CG A UG A
  UUGA UGUUCA CGAAU G  UUGAA GU  C U  U U
  |||| |||||| ||||| |  ||||| ||  | |  |
  GGCU GUAAGU GUUUG U  AACUU CG  G G  G C
AU    -      U     G GU     U  AU - GU U
Stem-loop sequence UUGAAUGUUCACGAAUGGUGUUGAAUGUCGCAUUGUAUCUGUGGGUAGCUUUCAAUGUGGUUUGUUGAAUGUCGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ072423.1
ncRNA:24   AUGGCUGUAAGUUGUUUGGUGUAA   1
  ||=|-|||*|||*|||||||||||
targets:11   UAUC-ACAAUCACCAAACCACAUU   33

2.5 TSA: Zea mays contig08060, mRNA sequence NA coding protein psRNATarget