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BaseInfo

ncRNA ID	novel_zma_miR13374
Species	Zea mays
Class	miRNA
Genome position	Chr6:31983282-31983333 [+]
Reference genome	RefGen_v4
Source	SRR5451005;SRR2089698
Length	24
Mature sequence(if miRNA)	29 - AAAUUUAGAGGACGCUGUUGGAUU - 52
Stem-loop(if miRNA)	--           A       CGGUC   UCUAGCAGCGU CUCUAAA     C   ||||||||||| |||||||   AGGUUGUCGCA GAGAUUU     U UU           G       AAAUU
Stem-loop sequence	UCUAGCAGCGUACUCUAAACGGUCCUUUAAAUUUAGAGGACGCUGUUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ099679.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   ||||||=|||=||||||||||||| targets:102   AAUCCAGCAGUGUCCUCUAAAUUU   125 Target Full Sequence	2.0	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   ||||||==|||||||||||||||| targets:5   AAUCCAGUAGCGUCCUCUAAAUUU   28 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =||=||=||||||||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =||=||=||||||||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =||=||=||||||||||||||||| targets:8   GAUUCAGCAGCGUCCUCUAAAUUU   31 Target Full Sequence	1.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   ||||||||||=||||*|||||||| targets:769   AAUCCAACAGUGUCCCCUAAAUUU   792 Target Full Sequence	2.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   *=|=|*=||||||||||||||||| targets:573   UGUUCUGCAGCGUCCUCUAAAUUU   596 Target Full Sequence	2.0	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
LQ237984.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =|||||*||||||=|||||||||| targets:8   GAUCCAUCAGCGUUCUCUAAAUUU   31 Target Full Sequence	2.5	Sequence 3979 from Patent EP2985353	NA	coding protein	psRNATarget
HI405854.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =|||||*||||||=|||||||||| targets:8   GAUCCAUCAGCGUUCUCUAAAUUU   31 Target Full Sequence	2.5	Sequence 3979 from Patent EP2074227	NA	coding protein	psRNATarget
JB166315.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   =|||||*||||||=|||||||||| targets:8   GAUCCAUCAGCGUUCUCUAAAUUU   31 Target Full Sequence	2.5	Sequence 3979 from Patent EP2559767	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||||||||||* targets:110   UCUCCAGCAGCGUCCUCUAAAUUC   133 Target Full Sequence	2.0	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||*|||||||| targets:15   UCUCCAGCAGCGUCCCCUAAAUUU   38 Target Full Sequence	2.5	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||||||||||* targets:587   UCUCCAGCAGCGUCCUCUAAAUUC   610 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||||||||||* targets:654   UCUCCAGCAGCGUCCUCUAAAUUC   677 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||*|||||||| targets:559   UCUCCAGCAGCGUCCCCUAAAUUU   582 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||||||||||* targets:1785   UCUCCAGCAGCGUCCUCUAAAUUC   1808 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||||||||||* targets:1884   UCUCCAGCAGCGUCCUCUAAAUUC   1907 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166308.1	ncRNA:24   UUAGGUU--GUCGCAGGAGAUUUAAA   1   ||-||||--||||||||||||||||| targets:8   AA-CCAAAGCAGCGUCCUCUAAAUUU   32 Target Full Sequence	2.5	Sequence 3972 from Patent EP2559767	NA	coding protein	psRNATarget
HI405847.1	ncRNA:24   UUAGGUU--GUCGCAGGAGAUUUAAA   1   ||-||||--||||||||||||||||| targets:8   AA-CCAAAGCAGCGUCCUCUAAAUUU   32 Target Full Sequence	2.5	Sequence 3972 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237977.1	ncRNA:24   UUAGGUU--GUCGCAGGAGAUUUAAA   1   ||-||||--||||||||||||||||| targets:8   AA-CCAAAGCAGCGUCCUCUAAAUUU   32 Target Full Sequence	2.5	Sequence 3972 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **||||=||||||||*|||||||| targets:2164   UCUCCAGCAGCGUCCCCUAAAUUU   2187 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **|||||||||||||*|||||||* targets:2259   UCUCCAACAGCGUCCCCUAAAUUC   2282 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008683257.2	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **|=||=||*|||||||||||||| targets:4148   UUUUCAGCAACGUCCUCUAAAUUU   4171 Target Full Sequence	2.0	PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945347.1	ncRNA:24   UUAGGUUGUCGCAGGAGAUUUAAA   1   **|||||=|*|||||||||||||* targets:356   UCUCCAAUAACGUCCUCUAAAUUA   379 Target Full Sequence	3.0	Zea mays clone 260245 mRNA sequence	NA	coding protein	psRNATarget