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BaseInfo

ncRNA ID	novel_zma_miR13358
Species	Zea mays
Class	miRNA
Genome position	Chr6:132513073-132513184 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	22
Mature sequence(if miRNA)	91 - CGGUGGUACACCGGACUGUCUG - 112
Stem-loop(if miRNA)	--    GU        --  -  A     GUC         --C     ---A UUUCGGGA   GAUA  GUCCGGUG  CC CC GGCGA   UCCGGUGAA   UAGCC    C        U   ||||  ||||||||  || || |||||   |||||||||   |||||    |        U   CUGU  CAGGCCAC  GG GG CUGUU   AGGCCACUU   AUCGG    C        C GU    --        AU  U  C     ---         AAU     CAUG UGAGGCAG
Stem-loop sequence	GAUAGUGUCCGGUGCCCCAGGCGAGUCUCCGGUGAACUAGCCACUUUCGGGAUUCGACGGAGUCGUACGGCUAUAAUUCACCGGAUUGUCCGGUGGUACACCGGACUGUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242243.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:158   CGGACAGUCCGGUGCACCACCG   179 Target Full Sequence	1.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:158   CGGACAGUCCGGUGCACCACCG   179 Target Full Sequence	1.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
JB170574.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:158   CGGACAGUCCGGUGCACCACCG   179 Target Full Sequence	1.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
BT065201.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:595   CGGACAGUCCGGUGCACCACCG   616 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:698   CGGACAGUCCGGUGCACCACCG   719 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:698   CGGACAGUCCGGUGCACCACCG   719 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||* targets:716   CGGACAGUCCGGUGCACCACCA   737 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:147   CGGACAGUCCGGUGCACCACCG   168 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||||||||*||||||| targets:638   CGGACAGUCCGGUGAACCACCG   659 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
JB170328.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||=|||||*||||||| targets:66   CGGACAGUUCGGUGCACCACCG   87 Target Full Sequence	2.5	Sequence 7992 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241997.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||=|||||*||||||| targets:66   CGGACAGUUCGGUGCACCACCG   87 Target Full Sequence	2.5	Sequence 7992 from Patent EP2985353	NA	coding protein	psRNATarget
HI409867.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=||||||=|||||*||||||| targets:66   CGGACAGUUCGGUGCACCACCG   87 Target Full Sequence	2.5	Sequence 7992 from Patent EP2074227	NA	coding protein	psRNATarget
EZ078322.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:34   CGGACUGUCCGGUGUGCCACCG   55 Target Full Sequence	2.5	TSA: Zea mays contig13961, mRNA sequence	NA	coding protein	psRNATarget
EZ091678.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:21   CGGACUGUCCGGUGUGCCACCG   42 Target Full Sequence	2.5	TSA: Zea mays contig27327, mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:305   CGGACUGUCCGGUGUGCCACCG   326 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
XM_020542612.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:1248   CGGACUGUCCGGUGUGCCACCG   1269 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657658.2	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:1332   CGGACUGUCCGGUGUGCCACCG   1353 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069667.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:1281   CGGACUGUCCGGUGUGCCACCG   1302 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*|||||||||=|||||| targets:1281   CGGACUGUCCGGUGUGCCACCG   1302 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
EU952168.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   ==*||*|||||||||=|||||| targets:332   UGAACUGUCCGGUGUGCCACCG   353 Target Full Sequence	2.5	Zea mays clone 1215356 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064671.1	ncRNA:22   GUCUGUCAGGCCACAUGGUGGC   1   |=|||*||||||||||*||||| targets:1094   CGGACUGUCCGGUGUAGCACCG   1115 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget