Search result

BaseInfo

ncRNA ID novel_zma_miR13348
Species Zea mays
Class miRNA
Genome position Chr5:67331009-67331071 [-]
Reference genome RefGen_v4
Source SRR5451005
Length 23
Mature sequence(if miRNA) 1 - AAGAGAUUAUAGGAGUGCGGGUU - 23
Stem-loop(if miRNA) ---  U       UAC    A    -   -    
   CC UAUUUUU   AUAA CUCU CUU AUUAU
   || |||||||   |||| |||| ||| ||||A
   GG GUGAGGA   UAUU GAGA GAG UGAUU
UUG  C       ---    A    A   A    
Stem-loop sequence CCUUAUUUUUUACAUAAACUCUCUUAUUAUAUUAGUAGAGAAGAGAUUAUAGGAGUGCGGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
S78780.1
ncRNA:23   UUGGGCGUGAGGAUAUUAGAGAA   1
  |||||||||||=|||||||||||
targets:65   AACCCGCACUCUUAUAAUCUCUU   87

1.5 (gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt] NA coding protein psRNATarget