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BaseInfo

ncRNA ID	novel_zma_miR13339
Species	Zea mays
Class	miRNA
Genome position	Chr5:21127880-21127977 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - UGACAAGAGGAUCACGGGAGGAUU - 24
Stem-loop(if miRNA)	--    A    G           A   A    C  UC    ---A      A   UGAC AGAG AUCACGGGAGG UUG AGGG AU  UGAG    GAAAUA A   |||| |||| ||||||||||| ||| |||| ||  ||||    ||||||   ACUG UCUC UAGUGCCCUCC AAC UCCC UA  ACUC    UUUUAU C CC    G    -           A   C    C  --    CCAA      U
Stem-loop sequence	UGACAAGAGGAUCACGGGAGGAUUGAAGGGCAUUCUGAGAGAAAUAAACUUAUUUUAACCCUCAAUCCCCUCCAAACCUCCCGUGAUCUCUGGUCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ082583.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||=||||||||||||||| targets:7   AAUCCUCCUGUGAUCCUCUUGUCA   30 Target Full Sequence	1.0	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||||||||*||||||| targets:289   AAUCCUCCCGUGAUCCCCUUGUCA   312 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU972380.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   |||*||=|||||||=||||||||| targets:390   AAUGCUUCCGUGAUUCUCUUGUCA   413 Target Full Sequence	2.5	Zea mays clone 380434 protein app1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158360.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   |||*||=|||||||=||||||||| targets:390   AAUGCUUCCGUGAUUCUCUUGUCA   413 Target Full Sequence	2.5	Zea mays protein app1 (LOC100285467), mRNA	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:839   AAUCCUCCCGGGAUCCCCUUGUCA   862 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:878   AAUCCUCCCGGGAUCCCCUUGUCA   901 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:883   AAUCCUCCCGGGAUCCCCUUGUCA   906 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:883   AAUCCUCCCGGGAUCCCCUUGUCA   906 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   ||||||||||*|||||*||||||| targets:1488   AAUCCUCCCGGGAUCCCCUUGUCA   1511 Target Full Sequence	2.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ114086.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   =||*=|||=|||||||||||*||| targets:285   GAUAUUCCUGUGAUCCUCUUUUCA   308 Target Full Sequence	2.5	TSA: Zea mays contig49747, mRNA sequence	NA	coding protein	psRNATarget
DQ245771.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   =||*=|||=|||||||||||*||| targets:702   GAUAUUCCUGUGAUCCUCUUUUCA   725 Target Full Sequence	2.5	Zea mays clone 20243 mRNA sequence	NA	coding protein	psRNATarget
AY105951.1	ncRNA:24   UUAGGAGGGCACUAGGAGAACAGU   1   =||*=|||=|||||||||||*||| targets:700   GAUAUUCCUGUGAUCCUCUUUUCA   723 Target Full Sequence	2.5	Zea mays PCO080381 mRNA sequence	NA	coding protein	psRNATarget