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BaseInfo

ncRNA ID	novel_zma_miR13338
Species	Zea mays
Class	miRNA
Genome position	Chr5:194087486-194087564 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	1 - GGAUUGAAAGGGAUUGAUACGGAU - 24
Stem-loop(if miRNA)	--       A         ---UA  GAUUAAACGAAUUUU   GGAUUGA AGGGAUUGA     CG               G   ||||||| |||||||||     ||   CCUAAUU UCCUUAACU     AA               A UA       C         CCCCC  AGUUAGAGAUCAUUU
Stem-loop sequence	GGAUUGAAAGGGAUUGAUACGGAUUAAACGAAUUUUGAUUUACUAGAGAUUGAAACCCCCUCAAUUCCUCUUAAUCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055069.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:969   AUCCGUAUCAAUCCCCUUCAAUCC   992 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:1490   AUCCGUAUCAAUCCCCUUCAAUCC   1513 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:1490   AUCCGUAUCAAUCCCCUUCAAUCC   1513 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:1476   AUCCGUAUCAAUCCCCUUCAAUCC   1499 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:1458   AUCCGUAUCAAUCCCCUUCAAUCC   1481 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||*|||||||| targets:1414   AUCCGUAUCAAUCCCCUUCAAUCC   1437 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||||||||||*|||||| targets:829   AUCCGUAUCAAUCCCUUCCAAUCC   852 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   |||||||||=|||||*|||||||| targets:1691   AUCCGUAUCGAUCCCCUUCAAUCC   1714 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   *|||*|*||||||||||||||||| targets:1615   UUCCAUCUCAAUCCCUUUCAAUCC   1638 Target Full Sequence	1.0	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT038305.1	ncRNA:24   UAGGCAUAGUUAGGGAAAGUUAGG   1   *|||*|*||||||||||||||||| targets:610   UUCCAUCUCAAUCCCUUUCAAUCC   633 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget