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BaseInfo

ncRNA ID novel_zma_miR13336
Species Zea mays
Class miRNA
Genome position Chr5:177349585-177349644 [+]
Reference genome RefGen_v4
Source SRR5451005
Length 24
Mature sequence(if miRNA) 1 - UACCCGUUGGGUAGACAGGUACGG - 24
Stem-loop(if miRNA) --       U        A    C    UG
  UACCCGU GGGUAGAC GGUA GGGU  G
  ||||||| |||||||| |||| ||||  U
  AUGGGUA UUCAUCUG CCAU CCCA  A
AA       -        C    A    UC
Stem-loop sequence UACCCGUUGGGUAGACAGGUACGGGUUGGUACUACCCAUACCCGUCUACUUAUGGGUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008652911.2
ncRNA:24   GGCAUGGACAGAUGGGUUGCCCAU   1
  ||||||||||=|||||||||||||
targets:182   CCGUACCUGUUUACCCAACGGGUA   205

1.0 PREDICTED: Zea mays DUF1997 family protein (LOC100274328), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008652909.2
ncRNA:24   GGCAUGGACAGAUGGGUUGCCCAU   1
  ||||||||||=|||||||||||||
targets:182   CCGUACCUGUUUACCCAACGGGUA   205

1.0 PREDICTED: Zea mays DUF1997 family protein (LOC100274328), transcript variant X1, mRNA NA coding protein psRNATarget