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BaseInfo

ncRNA ID	novel_zma_miR13327
Species	Zea mays
Class	miRNA
Genome position	Chr4:52584627-52584741 [+]
Reference genome	RefGen_v4
Source	SRR5451005
Length	24
Mature sequence(if miRNA)	92 - CGGCACUCGGCAAAGACGACCUCU - 115
Stem-loop(if miRNA)	--                     AA                        ACA     A   AGGUCGUCUUUGCCGAGUGCC  UUGGGACACUCGGCAAAGAGCCUG   UGGGG C   |||||||||||||||||||||  ||||||||||||||||||||||||   ||||| C   UCCAGCAGAAACGGCUCACGG  AACCCUGUGAGCCGUUUCUCGGGC   GUCCC C UC                     CA                        --G     U
Stem-loop sequence	AGGUCGUCUUUGCCGAGUGCCAAUUGGGACACUCGGCAAAGAGCCUGACAUGGGGACCCUCCCUGGCGGGCUCUUUGCCGAGUGUCCCAAACGGCACUCGGCAAAGACGACCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240695.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   ||||||||*||||||||||||||| targets:43   AGAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	1.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   ||||||||*||||||||||||||| targets:43   AGAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	1.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   ||||||||*||||||||||||||| targets:43   AGAGGUCGGCUUUGCCGAGUGCCG   66 Target Full Sequence	1.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   |||*-|||||||||||||||||=* targets:10   AGAU-UCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
JB167528.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   |||*-|||||||||||||||||=* targets:10   AGAU-UCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
HI407067.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   |||*-|||||||||||||||||=* targets:10   AGAU-UCGUCUUUGCCGAGUGCUA   32 Target Full Sequence	2.5	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
EU971584.1	ncRNA:24   UC-UCCAGCAGAAACGGCUCACGGC   1   ||-=|||||||*||||||*|||||| targets:138   AGCGGGUCGUCGUUGCCGUGUGCCG   162 Target Full Sequence	2.5	Zea mays clone 367570 mRNA sequence	NA	coding protein	psRNATarget
XM_008660613.2	ncRNA:24   UC-UCCAGCAGAAACGGCUCACGGC   1   ||-=|||||||*||||||*|||||| targets:219   AGCGGGUCGUCGUUGCCGUGUGCCG   243 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter B family member 6 (LOC100382746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943169.1	ncRNA:24   UCUCCAGCAGAAACGGCUCACGGC   1   |***|*|||||||||||||||||* targets:740   AAUCGCCGUCUUUGCCGAGUGCCU   763 Target Full Sequence	2.0	Zea mays clone 1575275 mRNA sequence	NA	coding protein	psRNATarget
XM_008676330.2	ncRNA:24   UCUC---CAGCAGAAACGGCUCACGGC   1   *|||---||**|||||||||||||||* targets:1711   CGAGUGUGUAUUCUUUGCCGAGUGCCU   1737 Target Full Sequence	3.0	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget